These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 754 fasta sequence [CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC-AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA-TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT] [+] EMBL BU804615 [CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGAC ] [+] EMBL BU804884 [ TCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAANAGGATTTCCGAAATGGCCTCAAACTCA TGCTGNTG ] [+] EMBL FR0063785 [ TCTGCAACTCTTAACTGTCTTCCCCCGACAGCTATGACCCCTCACGGAGGTTCTTGTGCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTG AGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCATTGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGAT ] [+] EMBL BU805658 [ AAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACCATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT] consensusID : consensus_2461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA] [+] EMBL BU805669 [CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA] consensusID : consensus_2461#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA] [+] EMBL FR0060161 [GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2461#0 CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 60 consensus_2461#1 ---------------------------CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 33 consensus_2461#2 -------------------------------------------GCAGCTG--AAACGAGT 15 *** ** ** * * consensus_2461#0 TCCCCCGACAGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 120 consensus_2461#1 TCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 93 consensus_2461#2 TACTTTGCAGTCAA------TCTGCAAAGTTTTTAGTGTCTTTTGGCG-CACAATGTCTT 68 * * * *** ** * *** ** ** *** * ** *** consensus_2461#0 AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 180 consensus_2461#1 AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 153 consensus_2461#2 CTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGA----GGGAGAGATGG 124 * ** * * * * ** ** ** ** * * ** *** consensus_2461#0 -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 239 consensus_2461#1 -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 212 consensus_2461#2 CAAGGCTGGTAGATAT--ACACCCCGGACCTTCACAGC--CTGGTGTA-ACTCCCACTTG 179 ** * ** ** * * * **** ***** ** * * * * * ** consensus_2461#0 AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGG-ATCCAGCC 298 consensus_2461#1 AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCC 272 consensus_2461#2 AGGAAAGCTG--GGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAAC 237 * *** * ** ** ** ** ** *** * * ** * consensus_2461#0 TGGGAGAAGCAGCAGAGGAAGACCTT-CACAGCCTGGTGTAACTCCC-ACTTGAGGAAAG 356 consensus_2461#1 TGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAAC 332 consensus_2461#2 TC----ATGCTGCTGCTGGAGGTCATCTCAGG--TGAACGACTTCCCAAACCCGACAAAG 291 * * ** ** * * ** * * * ** * **** * *** consensus_2461#0 CTGGGACGCAGATTG-AAAACATTG--AAGAGGATTTCCGAAATGGCCTC-AAACTCAT- 411 consensus_2461#1 CTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATT 392 consensus_2461#2 GCAAGATGC-GTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTT------CATC 344 ** ** * * ** ** * ** * * *** ** *** consensus_2461#0 -GCTGCTGCTGGAGGT---CATCTCAGGTGAACGA-CTTCCCAAACCCGACAAAGGCAAG 466 consensus_2461#1 GGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA------------- 439 consensus_2461#2 ---TGCAGCAAGGGAG---TCATACTGGGGGCCCA------------------------- 373 ** * * * * ** * * consensus_2461#0 ATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGA 526 consensus_2461#1 ------------------------------------------------------------ consensus_2461#2 ------------------------------------------------------------ consensus_2461#0 GTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTT 586 consensus_2461#1 ------------------------------------------------------------ consensus_2461#2 ------------------------------------------------------------ consensus_2461#0 GGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACC 646 consensus_2461#1 ------------------------------------------------------------ consensus_2461#2 ------------------------------------------------------------ consensus_2461#0 TCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTC 706 consensus_2461#1 ------------------------------------------------------------ consensus_2461#2 ------------------------------------------------------------ consensus_2461#0 AATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT 754 consensus_2461#1 ------------------------------------------------ consensus_2461#2 ------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |