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Takifugu rubripes
cluster # 2461 cluster # 2461       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2461#0 length = 754 sequences # 4  
consensus_2461#1 length = 439 sequences # 1  
consensus_2461#2 length = 373 sequences # 1  

consensusID : consensus_2461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 754
fasta sequence
                              [CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC-AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA-TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT]

[+] EMBL BU804615             [CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGAC                                                                                                                                                          ]
[+] EMBL BU804884             [       TCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACAGC AAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAANAGGATTTCCGAAATGGCCTCAAACTCA TGCTGNTG                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL FR0063785            [                                        TCTGCAACTCTTAACTGTCTTCCCCCGACAGCTATGACCCCTCACGGAGGTTCTTGTGCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTG AGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCATTGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGAT                                                                                                                                                                                                                                                                                              ]
[+] EMBL BU805658             [                                                                                                                                                AAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACCATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTGGGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT]


>consensus_2461#0 CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT TCCCCCGACAGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGA AGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGGATCCAGCCTG GGAGAAGCAGCAGAGGAAGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGG GACGCAGATTGAAAACATTGAAGAGGATTTCCGAAATGGCCTCAAACTCATGCTGCTGCT GGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAA GATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAACTGGTGTC CATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTTGGCATGATTTGGAC CATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACCTCTGCTAAGGAGGG TCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTCAATGTGCAGAACTT CCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT



consensusID : consensus_2461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA]

[+] EMBL BU805669             [CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA]


>consensus_2461#1 CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCTTCCCCCGACCGCAAGACCCCTCACGGA GGTTCTTGTCCTCACACGGCTTCGTCATATCTAAAACTTATTCGTTTTTCTTACTGAAAG TTGAAGGGGACGCGAAGGCCCTGATAAAGGTGGAACGATGACAGCTGTCGAAACCCAAAT TACGTACAGCAACTCCTACACGATTCAGCATGAAGAAGCTTACATGATCCAAGAGGACGA CTGGGACAGGGACCTGCTGGTGGGATCCAGCCTGGGAGAAGCAGCAGAGGGAGACCTTTC AAAGCTTGGTTTACCTCCCCACTGGAGGAAACCTGGGAAGCCAAATGTAAAACATTGTAA AAGGAATTTCGGAAATGGGCTCCAAACCCATTGGGTGTGGTTGGAGGGGCATCTCTCGGG GAAACGAATTTCCCAAAAA



consensusID : consensus_2461#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence
                              [GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA]

[+] EMBL FR0060161            [GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCACAATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAGATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGAGGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCATACTGGGGGCCCA]


>consensus_2461#2 GCAGCTGAAACGAGTTACTTTGCAGTCAATCTGCAAAGTTTTTAGTGTCTTTTGGCGCAC AATGTCTTCTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGAGGGAGAG ATGGCAAGGCTGGTAGATATACACCCCGGACCTTCACAGCCTGGTGTAACTCCCACTTGA GGAAAGCTGGGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAACTCA TGCTGCTGCTGGAGGTCATCTCAGGTGAACGACTTCCCAAACCCGACAAAGGCAAGATGC GTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGAGTCA TACTGGGGGCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2461#0      CGCCATCTCCGCACAGTCACCTCGCACCAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 60
consensus_2461#1      ---------------------------CAGTGGAGTGCTCTCTGCAACTCTTAACTGTCT 33
consensus_2461#2      -------------------------------------------GCAGCTG--AAACGAGT 15
                                                                 *** **   **  *  *

consensus_2461#0      TCCCCCGACAGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 120
consensus_2461#1      TCCCCCGACCGCAAGACCCCTCACGGAGGTTCTTGTCCTCACACGGCTTCGTCATATCTA 93
consensus_2461#2      TACTTTGCAGTCAA------TCTGCAAAGTTTTTAGTGTCTTTTGGCG-CACAATGTCTT 68
                      * *   *    ***      **    * *** **    **    ***  *   ** *** 

consensus_2461#0      AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 180
consensus_2461#1      AAACTTATTCGTTTTTCTTACTGAAAGTTGAAGGGGACGCGAAGGCCCTGATAAAGGTGG 153
consensus_2461#2      CTGCCTAGACAGACTGAGGGACCACAACAGATGGCTACATAGAGA----GGGAGAGATGG 124
                         * **  *    *        * *   ** **  **    **     *  * ** ***

consensus_2461#0      -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 239
consensus_2461#1      -AACGATGACAGCTGTCGAAACCCAAATTACGTACAGCAACTCCTACACGATTCAGCATG 212
consensus_2461#2      CAAGGCTGGTAGATAT--ACACCCCGGACCTTCACAGC--CTGGTGTA-ACTCCCACTTG 179
                       ** * **  ** * *  * ****         *****  **  *  *   * *  * **

consensus_2461#0      AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGTTGG-ATCCAGCC 298
consensus_2461#1      AAGAAGCTTACATGATCCAAGAGGACGACTGGGACAGGGACCTGCTGGTGGGATCCAGCC 272
consensus_2461#2      AGGAAAGCTG--GGACGCAGATTGAAAACATTGAAGAGGATTCCCGAAATGGCCTCAAAC 237
                      * ***   *    **  **    **  **   **   ***    *     *    **  *

consensus_2461#0      TGGGAGAAGCAGCAGAGGAAGACCTT-CACAGCCTGGTGTAACTCCC-ACTTGAGGAAAG 356
consensus_2461#1      TGGGAGAAGCAGCAGAGGGAGACCTTTCAAAGCTTGGTTTACCTCCCCACTGGAGGAAAC 332
consensus_2461#2      TC----ATGCTGCTGCTGGAGGTCATCTCAGG--TGAACGACTTCCCAAACCCGACAAAG 291
                      *     * ** ** *  * **  * *     *  **    *  **** *       *** 

consensus_2461#0      CTGGGACGCAGATTG-AAAACATTG--AAGAGGATTTCCGAAATGGCCTC-AAACTCAT- 411
consensus_2461#1      CTGGGAAGCCAAATGTAAAACATTGTAAAAGGAATTTCGGAAATGGGCTCCAAACCCATT 392
consensus_2461#2      GCAAGATGC-GTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTT------CATC 344
                          ** **    *  * ** ** *  **    *     *   *** **       *** 

consensus_2461#0      -GCTGCTGCTGGAGGT---CATCTCAGGTGAACGA-CTTCCCAAACCCGACAAAGGCAAG 466
consensus_2461#1      GGGTGTGGTTGGAGGGGCATCTCTCGGGGAAACGAATTTCCCAAAAA------------- 439
consensus_2461#2      ---TGCAGCAAGGGAG---TCATACTGGGGGCCCA------------------------- 373
                         **  *   * *          * **    * *                         

consensus_2461#0      ATGCGTTTCCACAAGATCGCCAACGTGAACAAAGCCCTGGACTTCATCTGCAGCAAGGGA 526
consensus_2461#1      ------------------------------------------------------------
consensus_2461#2      ------------------------------------------------------------
                                                                                  

consensus_2461#0      GTCAAACTGGTGTCCATCGGTGCTGAGGAAATTGTTGATGGTAATGTGAAGATGACTCTT 586
consensus_2461#1      ------------------------------------------------------------
consensus_2461#2      ------------------------------------------------------------
                                                                                  

consensus_2461#0      GGCATGATTTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAGAGACC 646
consensus_2461#1      ------------------------------------------------------------
consensus_2461#2      ------------------------------------------------------------
                                                                                  

consensus_2461#0      TCTGCTAAGGAGGGTCTGTTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAACGTC 706
consensus_2461#1      ------------------------------------------------------------
consensus_2461#2      ------------------------------------------------------------
                                                                                  

consensus_2461#0      AATGTGCAGAACTTCCACATCAGCTGGAAGGACGGCCTGGCTCTGTGT 754
consensus_2461#1      ------------------------------------------------
consensus_2461#2      ------------------------------------------------
                                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)