These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCGGACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAAGACGTCAACCTGATGATGTCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGCTCTGCTCGCAGAAACGGGACGTTTCGCCGGAGGACAAAGACAAGTTTCCTTACGACATCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCGATCAC] [+] EMBL CA844659 [CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGC TCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGGACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAAGACGTCAACCTGATGATGTCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGCTCTGCTCGCAGAAACGGGACGTTTCGCCGGAGGACAAAGACAAGTTTCCTTACGACATCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCGATCAC] [+] EMBL BU806744 [ AGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTTTTTTTTTTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGTACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCGG ] consensusID : consensus_2467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence [CTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT] [+] EMBL BU807723 [CTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT] [+] EMBL CA591383 [CTTCCGCTCTGTGCTCGTGCTCAGCTACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAAGACCGCGCACCTCCGGCGCCGCGCTCCCCTCGACGCGAGCTCGGGCCGACGTTTCCGCGGGGATGCCTGCGCGCTCTCGAGCCGCTCATGGCCGCACCAGCCCTTCTCGCTCGTGTCGCCGAGGCCGCGGCGCCGCCGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCCACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCGGAGCGGAAGGCCAGATTCCGCCATTTACACGAACATTGTTGCCCCCGAACCTACGGTTCTGCCCCCGCGTTGCACCCCTGACACTTGTCACGCGCG AAAAAAAAAAGCCCACAGGGCGACGATGACCGACGAAAAAGTGACGGAAGTTCGGGAGAAAGCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGC ] consensusID : consensus_2467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [AAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGGTGGATCCGGACCGTCTGGAGGGTAAATGTGGAGTTCGGCCGCCGCCGCCAGCCCCGCTGCCTCCCCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAACCGCGGCGTTTCGGCGCCTTGCTAACAGCTAACGGGTCCGTGCCTCGCCAGCTAGCGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGTGGGTTTACGGAAGAATCCGGTGTCATTCTAATAAAGTGTCCTCGGCCCGGAAACTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACCAGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTGTCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC] [+] EMBL CA590564 [AAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGGTGGATCCGGACCGTCTGGAGGGTAAATGTGGAGTTCGGCCGCCGCCGCCAGCCCCGCTGCCTCCCCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAACCGCGGCGTTTCGGCGCCTTGCTAACAGCTAACGGGTCCGTGCCTCGCCAGCTAGCGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGTGGGTTTACGGAAGAATCCGGTGTCATTCTAATAAAGTGTCCTCGGCCCGGAAACTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACCAGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTGTCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC] consensusID : consensus_2467#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGNNCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTGCTCGCCTGCGGGATGGCTGCCCACCTGCGGGGACTCTGCCCGCCCACCTCACCTGTCTCGCCGTTGCCTCCTCAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGG] [+] EMBL CA590527 [CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTCTGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGCGCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAGATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAGAGCATCTTCCTGAAGCTGCTGAACGAGCAGNNCGTCTGGAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGACGTCAAGTTCCGCGCCCACCGCTGCGTGCTCGCCGCCTGCTCCAACTACTTCAAGAAGCTCTTCAAGAAGCACGAGGTGCTCGCCTGCGGGATGGCTGCCCACCTGCGGGGACTCTGCCCGCCCACCTCACCTGTCTCGCCGTTGCCTCCTCAGGTCGACAACTCGTCCGTGATCGAGATCGACTTCATCCGCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2467#0 ----------------CCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCAGCTC 44 consensus_2467#3 CCCGCTGCCTGCGTGCCCCTGCAGTGTGTGCGTGCTGGCGCAAAGCGCGGCCTTCCGCTC 60 consensus_2467#1 ---------------------------------------------------CTTCCGCTC 9 consensus_2467#2 ------------------------------------------------------------ consensus_2467#0 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 104 consensus_2467#3 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 120 consensus_2467#1 TGTGCTCGTGCTCAGCAACAACAACAACAACCAGACAAAGTGGTTCCCGGCTCCCCGCGC 69 consensus_2467#2 -------------------------------------AAGTGGTTCCCGGCTCCCCGCGC 23 *********************** consensus_2467#0 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAG 164 consensus_2467#3 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGACCCATCGACTGCAG 180 consensus_2467#1 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGGTAA---GACCGCGC 126 consensus_2467#2 GCCGGCACACCGTGACGAACACACTCGTATCGGGCTGCTGTGAAGCTGG--TGGATCCGG 81 ********************************************* * * consensus_2467#0 ATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAG--AGCATCTTCCTGAAGCTGC 222 consensus_2467#3 ATGGCGGAGACGGTGAAGTACGTGGACAACGAGCACAAG--AGCATCTTCCTGAAGCTGC 238 consensus_2467#1 ACCTCCGGCGCCGCGCT-CCCCTCGACG-CGAGCTCGGGCCGACGTTTCCGCGGGGATGC 184 consensus_2467#2 ACCGTCTGGAGGGTAAA---TGTGGAGTTCGGCCGCCGCC-GCCAGCCCCGCTGC-CTCC 136 * * * ** ** * * * * * * consensus_2467#0 -TGAACGAGCA-GCG--TCTG-GAGGGCGAGCACTGCGACATCGCCGTGGNCGTGGAGGA 277 consensus_2467#3 -TGAACGAGCA-GNNCGTCTG-GAGGGCGAGCACTGCGACATCGCCGTGGTCGTGGAGGA 295 consensus_2467#1 CTGCGCGCTCTCGAGCCGCTC-ATGGCCGCACGAGCCCTTCTCGCTCGTGTCGCCGAGGC 243 consensus_2467#2 CCTCCCGAACCCGAACATCAGCGTGGACTCGCAACCGGACGGAACATGTTCCGAAGAA-C 195 ** * * * ** * * * ** ** consensus_2467#0 CGTCAAGTTCCGCGCCCACCGC-TGCGTGCTTCGCCGCCTGCTCCAACTACTTCAAGAAG 336 consensus_2467#3 CGTCAAGTTCCGCGCCCACCGC-TGCGTGCT-CGCCGCCTGCTCCAACTACTTCAAGAAG 353 consensus_2467#1 CGCGGCGCCGC-CGCCGCTCGCGTGCCTGCGTGTGTCCCGGGGACGGCGGTGCTGAGCCC 302 consensus_2467#2 CGCGGCGTTTC-GGCGCCTTGC-TAACAGCTAACGGGTCCGTGCCT----CGCCAGCTAG 249 ** * * ** ** * ** * * * consensus_2467#0 CTCTTCAAGAAGCACGAGGCCGACAACTCGTGCGTGATCGAGATCGACTTCATCCGCTCG 396 consensus_2467#3 CTCTTCAAGAAGCACGAGGTGCTCGCCT---GCGGGATGGCTGCC-----CACCTGCGGG 405 consensus_2467#1 ACCGACGGCGATGGCGGGCATTTGGTGGCGAGCAGTTTGAGGACGAGCGCCATTTTAGCG 362 consensus_2467#2 CGCCACAGCCCGCGTGCACACGCGCGCATGTCCGCGGCAGAGGTGCATGAACTGTTGGGT 309 * * * * consensus_2467#0 GACATTTTCGAGGAGGTGCTGAACTACATGTACACGGNCAAAATCTCAGTCAAGAAGAAA 456 consensus_2467#3 GACTCTGCC-------CGCCCACCT-CACCTGTCTCGCCGTTGCCTCCTC--------AG 449 consensus_2467#1 GAGCGGAAG-----GCCAGATTCCGCCATTTACACGAACATTGTTGCCCCC-------GA 410 consensus_2467#2 GGGTTTACG------GAAGAATCCGGTGTC-ATTCTAATAAAGTGTCCTCGGCCCGGAAA 362 * * * consensus_2467#0 GACGTCAACCTGATGATG--TCGTCGGGACAGATCCTCGGCATCCGCTTCCTCGACAAGC 514 consensus_2467#3 GTCGACAACTCGTC--CG--TGATCGAGATCGACTT----CATCCGCTCGG--------- 492 consensus_2467#1 ACCTACGGTTC-----TG--CCCCCGCGTTGCACCCCTGACACTTGTCACGCGCGAAAAA 463 consensus_2467#2 CTTTGTGGCGCCTTTTTAAACAGTTCTTATTCACCTCAGCTTCACACCTTTGCACTAACC 422 * consensus_2467#0 TCTGCTCGCAGAAACGGGACGTTTCGCCGG-AGGACAAAGACAAGTTTCCTTAC--GACA 571 consensus_2467#3 ------------------------------------------------------------ consensus_2467#1 AAAAAAGCCCACAGGGCGACGATGACCGAC-GAAAAAGTGACGGAAGTTCGGGA--GAAA 520 consensus_2467#2 AGTGGAAACCACGTGACGACCCCGCTCGACCAAAGTAACCACAAAGTTAAATAAATGGTG 482 consensus_2467#0 TCGTCAAGATGGCGCTGCCGCCGGAAGCGCAGCTGGCGGCCGACGCAGAGGTGCTCGGCG 631 consensus_2467#3 ------------------------------------------------------------ consensus_2467#1 GCACGAACTAATGTGTGATTAGCTAACGCGAGCTAACGCTGGCCTGAGT----------- 569 consensus_2467#2 TCGCCAGTAGCTCTGTGTCGTTCTGCGTAGACCCATCGAC-------------------- 522 consensus_2467#0 ATCAC 636 consensus_2467#3 ----- consensus_2467#1 ----- consensus_2467#2 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |