|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 628 fasta sequence
[TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAAGAGGACCAGAAGCGGACA]
[+] EMBL CA590458 [TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTANACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCANAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAA ]
[+] EMBL CA589439 [TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGCAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGNCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAGAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCCAAGCTGCCAACAAGCTCAATCAAGAAATGTTC ]
[+] EMBL BU806697 [ TATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAAGAGGACCAGAAGCGGACA]
[+] EMBL FR0061024 [ CAGGAGAACCACAAACCCCCTCAACAGACACACGTACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGCGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGCGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGGGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGGGGGCTCTCCCAAGGACCTGGGCTCACGCTCACCAGA ]
[+] EMBL FR0058652 [ AACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGGGGGCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGGTCTGGGGTTGATCTTCAGCTGGACTGTGGCGGTACCTGATGAGGCC ]
consensusID : consensus_2479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGGACCTGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAGTGATCTTAGCTGACTGTGCGTACCTGATAGGCAAGACTCTGATGCTACAGATGCTGAGAGCAGATATAACAGACCAAGTGCGCGA]
[+] EMBL FR0063817 [ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGGACCTGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAGTGATCTTAGCTGACTGTGCGTACCTGATAGGCAAGACTCTGATGCTACAGATGCTGAGAGCAGATATAACAGACCAAGTGCGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2479#0 TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGC 60
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 CACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACT 120
consensus_2479#1 --------------ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACT 46
**************** *****************************
consensus_2479#0 CAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTC 180
consensus_2479#1 CAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTG-CCCATAAGATTCAGTC 105
******************************************* ****************
consensus_2479#0 TCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTG 240
consensus_2479#1 TCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTG 165
*********************************** ************************
consensus_2479#0 TGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGT 300
consensus_2479#1 TGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGT 225
************************* ************** *******************
consensus_2479#0 GGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGA 360
consensus_2479#1 GGTCTCTCCCAAGGACCTGG-CTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAG 284
************* ****** ******************************** ****
consensus_2479#0 GTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCA 420
consensus_2479#1 --TGATCTT-AGCTG-ACTGTG-CGT-ACCTGATAGG--CAAGA-CTCTGATGCTA--CA 333
******* ***** ****** *** ******* * ***** ********* **
consensus_2479#0 GATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCT 480
consensus_2479#1 GATGCTGAG--AGCA-GATATAACAGACCAAGTGCGCGA--------------------- 369
******** **** * *** * * **** * **
consensus_2479#0 TCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGC 540
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 TCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGA 600
consensus_2479#1 ------------------------------------------------------------
consensus_2479#0 AATGGTCCAAGAGGACCAGAAGCGGACA 628
consensus_2479#1 ----------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |