These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 647 fasta sequence [CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA-TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT-GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGATGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTTGATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGACGAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC] [+] EMBL FR0058327 [CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTGGACGTTTCCTGCCGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACAT ] [+] EMBL FR0063074 [ TTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGGGGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGAT ] [+] EMBL FR0055736 [ tCACAAGTGCCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAACATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTTGAGAACCCAGTGGAAGTTTGTGAAGTCTCACGGGGTTAATA ] [+] EMBL FR0056293 [ CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGATGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTTGATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGACGAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC] [+] EMBL FR0056051 [ ATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTA TTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGCCACANGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGT GAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGAT ] consensusID : consensus_2525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG] [+] EMBL FR0056584 [CCATGGAGGCGACAAGTAGTTGACGTTTCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTTATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACATGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCTCACCAACAGACTCATCAAGAACCTGCCCAACTGTTGTGTGGTTCACCAGGATGACTTCTTCAAGTCATCACGGCTTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTTTGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG] consensusID : consensus_2525#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TTCCATCCCATATGAAGAATGCAATCAGAGGAGGAGCTCAAGAAACTACACAGTTCCAGACCCGCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACCTGACACACACGGACATCATGGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAACAAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAAGTCTCTATAGATGACTGAATTGGATCAGAGGAAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGTTTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA] [+] EMBL FR0055448 [TTCCATCCCATATGAAGAATGCAATCAGAGGAGGAGCTCAAGAAACTACACAGTTCCAGACCCGCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACCTGACACACACGGACATCATGGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAACAAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAAGTCTCTATAGATGACTGAATTGGATCAGAGGAAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGTTTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2525#0 CTCGTCTCTGCTCTTACTCACCGAACACAAGTGCCATGGAGGCGACAAGTAGTTGACGTT 60 consensus_2525#1 ---------------------------------CCATGGAGGCGACAAGTAGTTGACGTT 27 consensus_2525#2 ------------------------------------------------------------ consensus_2525#0 TCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTT 120 consensus_2525#1 TCCTGCTGCAACCTTCTCTTTTGAAGCTTTATTCCCGTCCGATCACTGGGTTGCTGGTTT 87 consensus_2525#2 ---------TTCCATCCCATATGAAG----AATGCAATCAGAGGAGGAGCTCAAGAAACT 47 ** ** * * ***** * * * ** ** * * * * consensus_2525#0 ATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACA 180 consensus_2525#1 ATTGACGTTTTGAAATTTCCAAACTTTATTTTTTTTACGATCTTCGACCATCTCCAAACA 147 consensus_2525#2 AC--ACAGTTCCAGACCC----GCCCGGGCTGTTCGATGGCCACGTCTGGCCTATGTACC 101 * ** ** * * * * ** * * * ** ** consensus_2525#0 TGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCT-CACCAAC 239 consensus_2525#1 TGAAGTACATCATCGGCATCGGCGGCGTTACCAATGGAGGGAAAACCACCCT-CACCAAC 206 consensus_2525#2 TGACACACACGGACATCAT-GGTGGAATCAGATGTAGATGTCTTGCAGCTTGATGGGAAC 160 *** *** * *** ** ** * * * ** * * * *** consensus_2525#0 AGACTCATCA-AGAACCTGCCCAACTGT-TGTGTGGT--TCACCAGGATGACTTCTTCAA 295 consensus_2525#1 AGACTCATCA-AGAACCTGCCCAACTGT-TGTGTGGT--TCACCAGGATGACTTCTTCAA 262 consensus_2525#2 AAGGTCAAAGGAGCAGCTGTTCAACTTTGTCTATAGTGACGTCCTGAACAACATCCAGAA 220 * *** ** * *** ***** * * * * ** ** * * ** ** ** consensus_2525#0 GCCACAAGATCAGATTGAAGTTGGTGAAGATGGCTTTAAGCAGTACGATGTCATCACGGC 355 consensus_2525#1 G-------------------------------------------------TCATCACGGC 273 consensus_2525#2 GTCTCTATA------------------------------------------GATGACTGA 238 * ** ** * consensus_2525#0 TTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTT 415 consensus_2525#1 TTTGGACATGGACGCCATGATGAGTACGATCTACGCATGGTTGGAGAACCCAGTGAAGTT 333 consensus_2525#2 ATTGGAT-CAGAGG--AAGATATACTCAGCTTGCACGCAGACAAATGCCTTGCCTTAAGT 295 ***** ** * * *** * * * * * * * * * consensus_2525#0 TGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGCCAAAGTCTGACCATAAGGA 475 consensus_2525#1 TGAGAAGTCTCACGGCGTTAATAACACCCTGGAGATCATGGCAAAGTCTGACAATAAGG- 392 consensus_2525#2 TTCTACCTGGCAGCTCATTTACCAGACTGCTATGATATTTATGTAA-------------- 341 * * * ** * ** * * ** *** * * consensus_2525#0 TGATGAGGAAACTCATATCCTTATTGTGGAAGGCTTCCTGCTTTACACCTACAGGCCTTT 535 consensus_2525#1 ------------------------------------------------------------ consensus_2525#2 ------------------------------------------------------------ consensus_2525#0 GATCGACGTGTTGAATCAGCGCTACTTCATTTCCATCCCATATGAAGAATGCAAAAAGAC 595 consensus_2525#1 ------------------------------------------------------------ consensus_2525#2 ------------------------------------------------------------ consensus_2525#0 GAGGAGCTCAAGACACTACACAAGTTCAGACCCGCCCGGCCTGTTCGATGGC 647 consensus_2525#1 ---------------------------------------------------- consensus_2525#2 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |