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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 529 fasta sequence
[TTTTTTTTTTTATTGCTCAGGGCCTTTTAATAGAAGAAACCAGAATTATGAGCATCAATTATGCAGGTCTGTTAAAAGAAAAACACTGGAACATTCTGTACAGACTGGAATAATCAAACATGGGAAAAGAACCTGGATTTAAAAAAAAAAAAAAAAAAAAAACCCACCAAACAAAAGAAAAAAATCCCCTAAAGCAACAATTGAAGAGTTGCAGATTTTGTTCAGCTTCTTTTGTAAAGACTAAAAACAAAATATCCATAGGGGTCCGTTCAAAGCCTTGCATATCTCAATTTAGTTGGACGACGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGAATGGGGCACGCTTACGTGGTGGCATCCTCAATACCTGTGCGTAGGTCAGTTTGGAGCCCACCTGAAAAGCCAGAGCACAAGGATTTAGTTTCAACCATGAGCATCTTTGCAACAGGTCTGCTATAACCTGAGGCATGTGTCCTGTCGGGGGTCTTTGCTGATAAATGTTGA]
[+] EMBL CA331469 [TTTTTTTTTTTATTGCTCAGGGCCTTTTAATAGAAGAAATCAGAATTATGAGCATCAATTATGCAGGTCTGTTAAAAGAAAAACACTGGAACATTCTGTACAGACTGGAATAATCAAACATGGGAAAAGAACCTGGATTTAAAAAAAAAAAAAAAAAAAAAACCCACCAAACAAAAGAAAAAAATCCCCTAAAGCAACAATTGAAGAGTTGCAAATTTTGTTCAGCTTTTTTTGTAAAGACTAAAAACAAAATATCCATAGGGGTCCGTTCAAAGCCTTGCATATCTCAATTTAGT ]
[+] EMBL CA331266 [ CAGTGCTTTTTAATAGAAGAAACCCGAATTATGAGCATCAATTATGCAGGTCTGTTAAAAGAAAAACACTGGAACATTCTGTACAGACTGGAATAATCAAACATGGGAAAAGAACCTGGATTTTTAAAAAAAACAAAAAACAAAA CAAACAAAAGAAAAAAATCCCCTAAAGCAACAATTGAAGAGTTGCAGATTTTGTTCAGCTTCTTTTGTAAAGACTAAAAACAATATATCCATAGTGGTCCGTTCAAAGCCTTGCATATCTCAATTTAGTTGGACGACGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGAATGGGGCACGCTTACGTGGTGGCATCCTCAATACCTGTGCGTAGGTCAGTTTGGAGCCCACCTGAAAAGCCAGAGCACAAGGATTTAGTTTCAACCATGAGCATCTTTGCAACAGGTCTGCTATAACCTGAGGCATGTGTCCTGTCGGGGGTCTTTGCTGATAAATGTTGA]
consensusID : consensus_2550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence
[GCTCAGTGCTTTTTAATAGAAGAAATCAGAATGATGAGCATCAATTATGCAGGTGTGTTAAAAGAAAAACACTGGAACATTCAAACATGGGAACAGAACCTGGATTTTTTTAAAAAAAAGACCCTAAACAAACTAAAGAAAAAGAAATCCCCAAAAGCAGCAATTGAAGAGGTGCAGATTCTGTTCAGCTTCTTTTGTAAAGACTGAAAACAAAATATCCATAGCGGTCCGTTCACAGCCTTGCATATCGCAGCTTTAGTGGACGGGGAGTCCCAGCTGATTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTGGTCAGCCTTGGTCTTTGAACTCTGCTCCAGACCCCGATTCAACATTGGCCCACAATTCTGAGCCTTGGAGGGCTGGAGCTCCG]
[+] EMBL CA331279 [GCTCAGTGCTTTTTAATAGAAGAAATCAGAATGATAAGCATCAATTATGCAGGTGTGTTTAAAGAAAAACACTGGAACATTCAAACATGGGAACAGAACCTGGATTTTTTT TAAAAAGACCCTAAACAAACTAAAGAAAA AAATCCCCTAAAGCAGCAATTGAAGAGTT GATTTTGTTCAGCTTCTTTTGTAAAGACTGAAAACCAAATATCCATAGCGATCCATTCATAGCCTTGCATATCTCAGCTTTAGTGGACGGTGAGTCCCAGCTGATTGGGGCTCTTGTTCTGGGTAGGGGGGGCTCAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTCGTCAGCCTTGGTCTTTGAACTCTGCTCCAGACCCCGATTCAACATTGGCCCACAATTCTGAGCCTTGGAGGGCTGGAGCTCCG]
[+] EMBL CA329421 [ TCAGTGCTTTTTAATAGAAGAAATCCCAATTATGAGCATCAATTATGCAGGTGTGTTAAAAGAAAAACACTGGAACATTCAAACATGGGAACAGAACCTGGATTTTTTTAAAAAAAAGACCCTAAACAAACTAAACAAAAAGATATCCTCAAAAGCAGCAATTGTAGAGGTGCAGATTCTGTTCAGCTT TTTTTTAAAGACTGAAAACAAAATATCCATAGCGGTCCGTTCACAGCCTTGCATATCGCAGCTTTAGTGGACAGGGAGTCCCAGCTGATTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTGGTCAGCCTTGGTCTTTGATCTCTGCTCCAGACCCCGATTTAACAT ]
consensusID : consensus_2550#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence
[TGCTCAGTGCTTTTTAATAGAAGAAATCAGAATTATGAGCATCAATTATGCAAGTGTGTTAAAAGAAAAAAAGATCCCCTAAAGCAGCAATGGAAGAGGTGCAGATTCTGTTCAGCTTCTAATATGAAAAAATATCCATTGCACTCCGTTCACAGCCTTGCATATCTCAGCTTAATTGGACGGCGAGTCCCAGCTGGTTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTCGTCGGCCTTGGTCTTTGATCTCTGCTCCAGACCCCGATTTAACATTGGCCGACAATTCTGAGCCTTGGAGGGCTGGGGCTCCGACACTGGCCCTGGGGTGTCCACACCGCTGCCCGTCTGTGG]
[+] EMBL CA329483 [TGCTCAGTGCTTTTTAATAGAAGAAATCAGAATTATGAGCATCAATTATGCAAGTGTGTTAAAAGAAAAAAAGATCCCCTAAAGCAGCAATGGAAGAGGTGCAGATTCTGTTCAGCTTCTAATATGAAAAAATATCCATTGCACTCCGTTCACAGCCTTGCATATCTCAGCTTAATTGGACGGCGAGTCCCAGCTGGTTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTCGTCGGCCTTGGTCTTTGATCTCTGCTCCAGACCCCGATTTAACATTGGCCGACAATTCTGAGCCTTGGAGGGCTGGGGCTCCGACACTGGCCCTGGGGTGTCCACACCGC ]
[+] EMBL CA329572 [ CTCAGTGCTTTTTAATAGAAGAAATCAGAATTATGAGCATCAATTATGCAAGTGTGTTAAAAGAAAAAAAGATCCCCTAAAGCAGCAATGGAAGAGGTGCAGATTCTGTTCAGCTTCTAATATGAAAAAATATCCATTGCACTCCGTTCACAGCCTTGCATATCTCAGCTTAATTGGACGGCGAGTCCCAGCTGGTTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGGGTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCACTTGCTGTCCTGGCGGATGAGCTGGTTGGTCGTCGGCCTTGGTCTTTGATCTCTGCTCCAGACCCCGATTTAACATTGGCCGACAATTCTGAGCCTTGGAGGGCTGGGGCTCCGACACTGGCCCTGGGGTGTCCACACCGCTGCCCGTCTGTGG]
consensusID : consensus_2550#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[TTGCTCAGGGCTTTTTAATAGACGAAACCAGAATTATGAGCATCAATTATGCAGGTCTGTTAAAAGAAAAACACTGGAACAATAAAACTAAGGGAACAGAACCTGGATTTTTTTTTTTTTTTTAAACCTAAACAAACAAAAGAAAAAAATCCCCTAAAACAGCAATTGAAGAGTGGCAGATTTTGTTCAGCTTCTTTTGCAAAGACTAAAAACAAAATATCCATAGTGGTCTGTTCAAAACCATGCATATCTTAACTTAATTGGATAAGGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGG]
[+] EMBL CA329666 [TTGCTCAGGGCTTTTTAATAGACGAAACCAGAATTATGAGCATCAATTATGCAGGTCTGTTAAAAGAAAAACACTGGAACAATAAAACTAAGGGAACAGAACCTGGATTTTTTTTTTTTTTTTAAACCTAAACAAACAAAAGAAAAAAATCCCCTAAAACAGCAATTGAAGAGTGGCAGATTTTGTTCAGCTTCTTTTGCAAAGACTAAAAACAAAATATCCATAGTGGTCTGTTCAAAACCATGCATATCTTAACTTAATTGGATAAGGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2550#0 TTTTTTTTTTTATTGCTCAGGGCCTTTTAATAGAAGAAACCAGAATTATGAGCATCAATT 60
consensus_2550#3 ------------TTGCTCAGGGCTTTTTAATAGACGAAACCAGAATTATGAGCATCAATT 48
consensus_2550#1 --------------GCTCAGTGCTTTTTAATAGAAGAAATCAGAATGATGAGCATCAATT 46
consensus_2550#2 -------------TGCTCAGTGCTTTTTAATAGAAGAAATCAGAATTATGAGCATCAATT 47
****** ** ********** **** ****** *************
consensus_2550#0 ATGCAGGTCTGTTAAAAGAAAAACACTGGAACATTCTGTACAGACTGGAATAATCAAACA 120
consensus_2550#3 ATGCAGGTCTGTTAAAAGAAAAACACTGGAACA----------------ATAA--AACTA 90
consensus_2550#1 ATGCAGGTGTGTTAAAAGAAAAACACTGGAACATTC-------------------AAACA 87
consensus_2550#2 ATGCAAGTGTGTTAAAAGAAAAAAA----------------------------------- 72
***** ** ************** *
consensus_2550#0 TGGGAAAAGAACCTGGATTTAAAAAAAAAAAAAAAAAAAAAACCCACCAAACAAAAGAAA 180
consensus_2550#3 AGGGAACAGAACCTGGATTTTTTTTTTTTTTTTAAACCTAAAC-----AAACAAAAGAAA 145
consensus_2550#1 TGGGAACAGAACCTGGATTTTTTTAAAAAAAA-GACCCTAAAC-----AAACTAAAGAAA 141
consensus_2550#2 ------------------------------------------------------------
consensus_2550#0 AA--AATCCCCTAAAGCAACAATTGAAGAGTTGCAGATTTTGTTCAGCTTCTTTTGTAAA 238
consensus_2550#3 AA--AATCCCCTAAAACAGCAATTGAAGAGTGGCAGATTTTGTTCAGCTTCTTTTGCAAA 203
consensus_2550#1 AAGAAATCCCCAAAAGCAGCAATTGAAGAGGTGCAGATTCTGTTCAGCTTCTTTTGTAAA 201
consensus_2550#2 ----GATCCCCTAAAGCAGCAATGGAAGAGGTGCAGATTCTGTTCAGCTTCTAATATGAA 128
****** *** ** **** ****** ******* ************ * **
consensus_2550#0 GACTAAAAACAAAATATCCATAGGGGTCCGTTCAAAGCCTTGCATATCTCAATTTAGTTG 298
consensus_2550#3 GACTAAAAACAAAATATCCATAGTGGTCTGTTCAAAACCATGCATATCTTAACTTAATTG 263
consensus_2550#1 GACTGAAAACAAAATATCCATAGCGGTCCGTTCACAGCCTTGCATATCGCAGCTTTAGTG 261
consensus_2550#2 ----------AAAATATCCATTGCACTCCGTTCACAGCCTTGCATATCTCAGCTTAATTG 178
*********** * ** ***** * ** ******** * ** **
consensus_2550#0 GACGACGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGA 358
consensus_2550#3 GATAAGGAGTCTCAGCTGATTGGGGCTCTTGTTGTGGGTAGGGTGGGGTAAGGTCTGGGG 323
consensus_2550#1 GACGGGGAGTCCCAGCTGATTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGG 321
consensus_2550#2 GACGGCGAGTCCCAGCTGGTTGGGGCTCTTGTTCTGGGTAGGGGGGGCTAAGGTCTGGGG 238
** ***** ****** ************** ********* *** ***********
consensus_2550#0 ATGGGGCACGCTTACGTGGTGGCATCCTCAATACCTGTGCGTAGGTCAGTTTGGAGCCCA 418
consensus_2550#3 ------------------------------------------------------------
consensus_2550#1 GTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCA 381
consensus_2550#2 GTGGGGCACGCTTCCGTGGGGGCATCATCAAGACCTGTGCGTACGTCAGTTTGGAGCCCA 298
consensus_2550#0 CCTGAAAAGCCAGAGCACAAG--GATTTAGTTTCAACCATGAGC----ATCTTTGCAACA 472
consensus_2550#3 ------------------------------------------------------------
consensus_2550#1 CTTGCTGTCCTGGCGGATGAGCTGGTTGGTGGTCAGCCTTGGTC----TTTGAACTCTGC 437
consensus_2550#2 CTTGCTGTCCTGGCGGATGAGCTGGTTGGTCGTCGGCCTTGGTCTTTGATCTCTGCTCCA 358
consensus_2550#0 GGTCT-GCTATAACCTGAGGCATGTGTCCTG----TCGGGGGTCTTTGCTGATAAATGTT 527
consensus_2550#3 ------------------------------------------------------------
consensus_2550#1 TCCAG-ACCCCGATTCAACATTGGCCCACAA----TTCTGAGCCTTGGAGGGCTGGAGCT 492
consensus_2550#2 GACCCCGATTTAACATTGGCCGACAATTCTGAGCCTTGGAGGGCTGGGGCTCCGACACTG 418
consensus_2550#0 GA-------------------------------- 529
consensus_2550#3 ----------------------------------
consensus_2550#1 CCG------------------------------- 495
consensus_2550#2 GCCCTGGGGTGTCCACACCGCTGCCCGTCTGTGG 452
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |