These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1147 fasta sequence [CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT-TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAGGACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGGCCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTGCGGTCGT] [+] EMBL CA588666 [CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCTTTGAAATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGGGACAGGATCCTGGAG ] [+] EMBL BU808107 [ CCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGA ] [+] EMBL FR0058443 [ CGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGGACTGCCGGAAACACTACTGGGAGAAGTTTGGAGAGCTCTTGCACGGCTGCTCGCT ] [+] EMBL FR0058396 [ TTATCTCGTCGCTTCCCCTCTCATTGGAGACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGNATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGGTTCAAACGAAAGGTTTCCAGGACACCTGGCACAACGATTGCGTTCAGTGGTCCGTGTGCTCT ] [+] EMBL BU807401 [ ACTCCGA AGGTGAGACGCATTTCAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCAT ] [+] EMBL BU807225 [ AGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAGGACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGGCCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTGCGGTCGT] consensusID : consensus_2560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGA] [+] EMBL BU808351 [TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTCTCCTCTCCTTCCAATGCAGTCCTGGAAAGA] [+] EMBL BU807071 [TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2560#0 CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGG 60 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 GTTTATCTCGTCGCTTCCCCTCTCATTTAAACCACCGACTCCCGGTTTGGATTAACTCTG 120 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 ACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGAT 180 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 CAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATG 240 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 CAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGT 300 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 TCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGC 360 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 CGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACC 420 consensus_2560#1 -----TCTTTGTCCAGTGGAGG--GAACGAGTCGGTCA-GCCTGTCTG-------TGTTT 45 * * * * ** * * ** **** * *** * ** consensus_2560#0 GGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGC 480 consensus_2560#1 GGGTTT-CCA-GGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGC 103 ** *** ************************************************* consensus_2560#0 TGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATAC 540 consensus_2560#1 TGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATAC 163 ************************************************************ consensus_2560#0 TGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAA 600 consensus_2560#1 TGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAA 223 ************************************************************ consensus_2560#0 TCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAAC 660 consensus_2560#1 TCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAAC 283 ************************************************************ consensus_2560#0 GGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAA 720 consensus_2560#1 GGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAA 343 ************************************* ********************** consensus_2560#0 GTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGG 780 consensus_2560#1 GTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGG 403 ******************************************************* **** consensus_2560#0 GACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGAT 840 consensus_2560#1 GACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGAT 463 ************************************************************ consensus_2560#0 GATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGG 900 consensus_2560#1 GATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGG 523 ************************************************************ consensus_2560#0 CAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACC 960 consensus_2560#1 CAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACC 583 ************************************************************ consensus_2560#0 TCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAG 1020 consensus_2560#1 TCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGA--------------- 628 ********************************************* consensus_2560#0 GACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGG 1080 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 CCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTG 1140 consensus_2560#1 ------------------------------------------------------------ consensus_2560#0 CGGTCGT 1147 consensus_2560#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |