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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 430 fasta sequence
[TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCAAT-AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGCAGAGGGAGGGGG]
[+] EMBL CA590013 [TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGCAGAGGGAGGGGG]
[+] EMBL FR0059223 [ CGAGGGGACGGAGATTCCACCTCTTATTCATCAATGAGTCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAGAGTTATCGGGCGACTTCCTGACAAGCGACTCAGGTTTTTGGAACTTTGATTTCCCGATTCTTGGAATTTACCCTGAAGATTTCCCGGGAGCCACGATGCTTAGCA ]
[+] EMBL FR0059960 [ CGAGGGGACGGAGATTCCACCTCTTATTCATCAAT AATGTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTGTGGTTTCCCGATTCTTGAAG ]
[+] EMBL FR0059380 [ GGGGATTGAGATTCCACCTCTTATTCATCAAT AAGGTGCTGCTGTGGAAGTTCTGACCCCACTCTCGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGGTTACCCTGAAGATTTCCCGGGAGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGG GGCTGTCGGCTTCCTGTTTCTGGTCATGGCTGCTGGAAGC ]
[+] EMBL FR0059763 [ ATTCCACCTCTTATTCATCAAG GGTCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGA GCCACGATGCTCAGCAGGAACCTGAAGAA ]
[+] EMBL FR0059883 [ CACCTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA ]
[+] EMBL FR0059121 [ CTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAGAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAA ]
consensusID : consensus_2562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[AGAGGTGTGATGCCAAATCGCGACAATAGGCGTGGAGTTGAGGGCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATGGAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTTTACGACAGTAAATTCCACTCTGACCTCTTCAGCAAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA]
[+] EMBL FR0060427 [AGAGGTGTGATGCCAAATCGCGACAATAGGCGTGGAGTTGAGGGCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATGGAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTTTACGACAGTAAATTCCACTCTGACCTCTTCAGCAAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2562#0 TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCA 60
consensus_2562#1 ------------------------------------------------------------
consensus_2562#0 ATAATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACG 120
consensus_2562#1 ----------------AGAGGTGTGATGCCAAA-TCGCGACAATAGGCGTGGAGTTGAGG 43
** * *** *** * * * ** ** * * *** * *
consensus_2562#0 A-GATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTG 179
consensus_2562#1 GCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATG 103
**** **** * *** * * *** *** * *** **
consensus_2562#0 AAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCA-GAAAGTTATCGGGCGACTTCCT 238
consensus_2562#1 GAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTT 163
** * * * * ** * * * * * * * *** *
consensus_2562#0 GACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGA 298
consensus_2562#1 TACGAC--AGTAAATTCC-----ACTCTGACCTCTTCAGC---AAAGTTTACCCTGAAGA 213
** * * * * ** *** ** ** * ****************
consensus_2562#0 TTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGG 358
consensus_2562#1 TTTCCCGGAGGCCACGATGCTCAGCA---------------------------------- 239
**************************
consensus_2562#0 CTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGC 418
consensus_2562#1 ------------------------------------------------------------
consensus_2562#0 AGAGGGAGGGGG 430
consensus_2562#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |