These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAGGAAAAATNAATNAATNAATNAATCAACCATTATTTATACAGTGTCTTTTACAATCAGAATTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCTGACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACTGATGGCCGGCTGGGTAGAGAGAGAGGAGAAGGGGGAGGACAGGTTGGTAGAACAGGCAGAAATCAAAGATATACATTAATAGTACAAGCTGCTGGTATAAGAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGACCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCAATGATCTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGCCTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATAATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAGAATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACCAAAACACATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT] [+] EMBL CA588381 [TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAGGAAAAATNAATNAATNAATNAATCAACCATTATTTATACAGTGTCTTTTACAATCAGAATTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCTGACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACTGATGGCCGGCTGGGTAGAGAGAGAGGAGAAGGGGGAGGACAGGTTGGTAGAACAGGCAGAAATCAAAGATATACATTAATAGTACAAGCTGCTGGTATAAGAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGACCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCAATGATCTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGCCTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATAATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAGAATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACCAAAACACATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT] consensusID : consensus_2579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [TTATTTATATAGCGTCTTTTACGATCAAAATTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCAGACAAGCAACAATGGCAAGGAAAAACTCCCC-TTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAGGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAAAATATTTTGTAATGAGTTACTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAGAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTTGT] [-] EMBL CA329188 [TTATTTATATAGCGTCTTTTACGATCAAAATTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCAGACAAGCAACAATGGCAAGGAAAAACTCCCCTTTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGCCCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAGGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAATATATTTTGTAATGAGTTACTTGAAAGTGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAAAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTT ] [-] EMBL CA331039 [ TGGCAAGGAAAAACTCCCC TTTAACAGGAAGAAACCTTGAGCAGGACCAAGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAAGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAAAATATTTTGTAATGAGTTACTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAGAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTTGT] consensusID : consensus_2579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 509 fasta sequence [CTGTGGAACTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG-CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATGTCACACACTCTGAAAGAGGGTACGTGGAGGCG] [+] EMBL CA331179 [CTGTGGAACTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACT CCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAGCCCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGT ] [+] EMBL CA329488 [ GGTACTGATGAGCTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTCGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCACACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATG ] [+] EMBL CA331504 [ ACTGATGAGTTTATGCACATTTACCCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTT ] [+] EMBL CA329625 [ CTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCACACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATGTCACACACTCTGAAAGAGGGTACGTGGAGGCG] consensusID : consensus_2579#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CACGACCCAAACGATGGTTTATTGTTCAAAAAATCAAAATCAATCTTTATTTATATAGCGTCTTATACAATCAAAATTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCAAACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAGGAAAGGAGGGAGGACAGGTAAAGGATAAAATAGGTAGGAGAGGAAAGGGGTAA] [+] EMBL CA331309 [CACGACCCAAACGATGGTTTATTGTTCAAAAAATCAAAATCAATCTTTATTTATATAGCGTCTTATACAATCAAAATTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCAAACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAGGAAAGGAGGGAGGACAGGTAAAGGATAAAATAGGTAGGAGAGGAAAGGGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2579#0 TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAG 60 consensus_2579#3 ------------------------------------CACGACCCAAACGATGGTTTATTG 24 consensus_2579#1 ------------------------------------------------------------ consensus_2579#2 --------------------------------------CTGTGGAACTGATGAGTTTATG 22 consensus_2579#0 GAAAAATNAATNAATNAATN-AATCAACCATTATTTATACAGTGTCTTTTACAATCAGAA 119 consensus_2579#3 T-----TCAAAAAATCAA---AATCAATCTTTATTTATATAGCGTCTTATACAATCAAAA 76 consensus_2579#1 ------------------------------TTATTTATATAGCGTCTTTTACGATCAAAA 30 consensus_2579#2 CACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTAC------AA 76 * ****** ** **** *** ** consensus_2579#0 TTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCT-GACAAGCAACAGTGGCAA 178 consensus_2579#3 TTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCA-AACAAGCAACAGTGGCAA 135 consensus_2579#1 TTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCA-GACAAGCAACAATGGCAA 89 consensus_2579#2 TTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAA 136 ****** *** **** ********** ** ***** ********* ****** consensus_2579#0 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGAC 238 consensus_2579#3 GGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGAC 195 consensus_2579#1 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGAC 149 consensus_2579#2 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGAC 196 ************************ ********** ******* **** *********** consensus_2579#0 --------TGATGGCCGGCTGGGTAGAGAGAGAG-----GAGAAGGGGGAGGACAGGTT- 284 consensus_2579#3 CCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAG-----GAAAGGAGGGAGGACAGGTAA 250 consensus_2579#1 CCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAG-----GAGAGAGAGAAGGAGAGGGCG 204 consensus_2579#2 CCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTT 256 ************* * * * ** * * ** * consensus_2579#0 --GGTAGAACAGGCAGAA-ATCAAAG-ATATACATTAATAGTACAAGCTGCTGGTATAA- 339 consensus_2579#3 AGGATAAAATAGGTAGGAGAGGAAAG-GGGTAA--------------------------- 282 consensus_2579#1 AAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCT 264 consensus_2579#2 TTAATTCCACCATCAGGT--TCACTCGAGCACCCAAACGCGCACACAAAGACTGCAC--- 311 * * consensus_2579#0 -GAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGA 398 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 CAAATTGACTGTTGCCTGTAAACAAAGTCATGCT-GCCTATCAAGACCTAGTTGGCTTGA 323 consensus_2579#2 -AGGTTTTTCAGACCCTTTAAGACTA---AGACCAAAAAATATTTTTGCCCACGGCTTCT 367 consensus_2579#0 CCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCA 458 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 CTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAG--AACTGAAGGATGACTGTGGTG 381 consensus_2579#2 GGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAG-TATCCAGGAGCCCCCCCGGCGG 426 consensus_2579#0 ATGAT---CTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGC 515 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 AC-AT---ATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGA 437 consensus_2579#2 AGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTT-GTTCCCATGTCACACAC 485 consensus_2579#0 CTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATA 575 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 CT-TCAGCAGGCCACA---CAAGGGTGTGATATCCT--GACTAAA-----ATATTTTGTA 486 consensus_2579#2 TCTGAAAGAGGGTACG---TGGAGGCG--------------------------------- 509 consensus_2579#0 ATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAG 635 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 ATGAGTTA----CTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGG-AA 541 consensus_2579#2 ------------------------------------------------------------ consensus_2579#0 AATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACC-AAAACAC 694 consensus_2579#3 ------------------------------------------------------------ consensus_2579#1 AATCCATGCT--TGGAAGAAACCTCAAAGTATGGTGGAGCC--GGGACCACTTGGAGCAC 597 consensus_2579#2 ------------------------------------------------------------ consensus_2579#0 ATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT 741 consensus_2579#3 ----------------------------------------------- consensus_2579#1 CTGTTGT---------------------------------------- 604 consensus_2579#2 ----------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |