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Takifugu rubripes
cluster # 258 cluster # 258       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_258#0 length = 450 sequences # 1  
consensus_258#1 length = 447 sequences # 1  

consensusID : consensus_258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence
                              [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC]

[+] EMBL CA330064             [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC]


>consensus_258#0 GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTG GTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATA AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACT CTTTTGTGATATAATAACGTATAGTGAAGC



consensusID : consensus_258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence
                              [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT]

[-] EMBL CA330944             [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT]


>consensus_258#1 GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGA GCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACA AACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCA AATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCC GGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCG CACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_258#0      GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTG 60
consensus_258#1      ------------------------------------------------------------
                                                                                 

consensus_258#0      GTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATA 120
consensus_258#1      ----------------------------------------GAAGGCAATCGAGCACCATA 20
                                                             ********************

consensus_258#0      AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 180
consensus_258#1      AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 80
                     ************************************************************

consensus_258#0      TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 240
consensus_258#1      TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 140
                     ************************************************************

consensus_258#0      TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 300
consensus_258#1      TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 200
                     ************************************************************

consensus_258#0      TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 360
consensus_258#1      TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 260
                     ************************************************************

consensus_258#0      AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACT 420
consensus_258#1      AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGC 320
                     *****************************************************       

consensus_258#0      CTTTTGTGATATAATAACGTATAGTGAAGC------------------------------ 450
consensus_258#1      CGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 380
                     *   *  *  *  *   *      *    *                              

consensus_258#0      ------------------------------------------------------------
consensus_258#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 440
                                                                                 

consensus_258#0      -------
consensus_258#1      TCTCTCT 447
                            




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)