These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 699 fasta sequence [ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA-GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC-TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT] [+] EMBL CA333129 [ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGGTGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACAC ] [+] EMBL CA591343 [ GCGGGCCGCCGACGCAGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGACGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCT ] [+] EMBL FR0058904 [ GGACCGCCGACGCAGGTTTGGGTTTCCATTTTCATAGCGAGGGGCGNGGGGGATCGTCAACATGGAACCGGAGATGCA GTACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGGCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGGGCCACTACCAACACGGGCACATAAACTTCTACCTTAA ] [+] EMBL CA589556 [ TTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAGATGGA GGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTGGATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCCGAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTCCCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT] [+] EMBL FR0058295 [ AGCCTCGGGTTTTTTTGGCAACATGGTACCGGAGATGGAGGGACAAAACGTTGGAGCTGATGAACACCCCAGGAATGGAGTCGCAAAACCTCGAGGACGACCTGTCGCCTAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGTGCTCCCGTAAGCGACCGTCGCATGGAAACTATGAGAAGGAGAAGGAACACGTGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGTTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGTCACATAAACTTCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCATGGCTTG ] [+] EMBL FR0058140 [ TGATGAACACGTCTTGAATGGAGTCGCAAAACCTCGTGGACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGGCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGAATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGATTTCATCACTGCGGTGCCAGCCCAAGGCTTGGACCATATAGCAGAGA ] [+] EMBL FR0060120 [ ACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGCTCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACAC TGCATCACCCTCTTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATGTGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTT CTGGATGCTCGCTCCCTATGCTCAGCAAAACTGGTGTGTAAAGAGTGGCAGAGGGTCATCTCCGA GGGATGCTGGGGAAGA ] consensusID : consensus_2584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNCNNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATGAGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTGGAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCCGAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGTCCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC] [+] EMBL BU807454 [CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNCNNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATGAGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTCATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTGGAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCCGAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAAGGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGTCCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2584#0 ACCAGAGCTGTGTGTTAAAGCGAAATGTATGACGTCTCCGCATTTGCGGGCCGCCGACGC 60 consensus_2584#1 ------------------------------------------------------------ consensus_2584#0 AGGGCTGGGTTTCCATTTTCATAGCGAGTTTCGGGGGGGATCGTCAACATGGAACCGGAG 120 consensus_2584#1 ------------------------------------------------------------ consensus_2584#0 ATGGAGGACAAAACGTTGGAGCTGATGAACACGTCAGGAATGGAGTCGCAAAACCTCGTG 180 consensus_2584#1 ------------------------------------------------------------ consensus_2584#0 GACGACCTGTCGCCAAAGAAAAACACGGTTCTGAAGCATACTAACGGTCCTGTAGTGGGC 240 consensus_2584#1 ------------------------------------------------------------ consensus_2584#0 TCCCGTAAGCGACCGTCGCAAGGAAACTATGAGAAGGAGAAGGAACACTGCATCACCCTC 300 consensus_2584#1 ----------------CGGAAGGAAACTATGAGAAGGAGAAGGAACACAGCAGCACCCNC 44 ** ***************************** *** ***** * consensus_2584#0 TTTGACCAGTGGTCGGAGGCCGACCAGGTGGAGTTTGTTGAGCGCCTGATTTCCCGTATG 360 consensus_2584#1 NNGGACCAGGGGNCGGAGGACGACCAGGGGGAGTTTTTTTTTTTCCTGANANCCCGAATG 104 ****** ** ****** ******** ******* ** ***** **** *** consensus_2584#0 TGCCACTACCAGCACGGCCACATAAACTCCTACCTCAAACCCATGCTGCAGAGGGACTTC 420 consensus_2584#1 AGCCAGTACCAGTATGTCCACCTAAACTCCTACCTCAAACCGATGCTGCAGAGGGACTTC 164 **** ****** * * **** ******************* ****************** consensus_2584#0 ATCACTGCGTTGCCAGCCCAAGGCTTGGACCATATAGCAGAGAATATCTTGTCTTTCCTG 480 consensus_2584#1 ATCACTGCGTTGCCAGCCCAAGGGTTGGACCATATAGCAGAGAATATCTTGACTTTCGTG 224 *********************** *************************** ***** ** consensus_2584#0 GATGCTCGCTCCCTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCC 540 consensus_2584#1 GAGGCTTGCTCCGTATGCTCAGCAGAACTGGTGTGTAAGGAGTGGCAGAGGGTCATATCC 284 ** *** ***** ******************************************* *** consensus_2584#0 GAGGGGATGCTGTGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACCCGCTCTGGAAA 600 consensus_2584#1 GAGGGGATGCTGGGGAAGAAGCTCATTGAGCGAATGGTGCGCACCGACACGCTATGGAAA 344 ************ *********************************** **** ****** consensus_2584#0 GGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGCAGAAGTC 660 consensus_2584#1 GGCCTATCCGAGAGACACCAATGGGAGAAATATCTCTTCAAGAACCGCACAGAAGAAGGT 404 **************************************************** ***** consensus_2584#0 CCACCCAACTCTTACTATCACTCACTGTATCCCAAGATT--------- 699 consensus_2584#1 CCACCCAACGGTTAGTATGGCTGACTGGATCCCAAGAAGATTCCAGAC 452 ********* *** *** ** **** ********* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |