These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGAAGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCAAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGTTCACACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCCTGAATGGTCAGTGGACGCCA] [+] EMBL CA846248 [ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGAAGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCTAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGTTCACACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCCTGAATGGTCAGTGGACGCCA] [+] EMBL CA340901 [ GATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTCACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCAAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCTTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGG ] consensusID : consensus_2588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 695 fasta sequence [TTGTAATATCGACTGGACGATCCCCAGTTTGTTTCCAGAGCTTCGCTAATCATTGCGACACTGCGTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT-GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA] [+] EMBL CA332731 [TTGTAATATCGACTGGACGATCCCCAGTTTGTTTCCAGAGCTTCGCTAATCATTGCCACACTGCGTCCTCTTCTACTGTCA CTCTGA TTCCCTCTCAGTTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAAACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGTCATTCTTTTGACTACATTCCCAGATGGGAGCAGGGCTACTTTTGTCTGCAGTTTGGGCCACACTACTGCAGGAGGGTCCGGGGTTGTTACGTGTACTGCTGGGACCTGGAGTCAAGT ] [+] EMBL BU808344 [ GACACTGCGTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGCGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTTAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA] [+] EMBL BU808291 [ GTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGTTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA] [+] EMBL CA589582 [ TTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGGTCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAAACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGAGCAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGTCCAGGGTTGTTACGTGTACTGCTGGGACCTGGAGTCAAGTGACGCTACGCTGCGAGAAGAAGATTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAATGAGTTT GGTGATAGAATTGTGGTTACTTGCAACCTCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGTATGTGAAGTGGTGACATGTGACCTACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGTTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTT ] [+] EMBL BU807821 [ GAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCGCCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACA ] [+] EMBL FR0059099 [ GGGGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACGGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGGGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTTGGGTGATAAAATTGTGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2588#0 ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGA 60 consensus_2588#1 ------------------------------------------------------------ consensus_2588#0 AGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAA 120 consensus_2588#1 ------------------TTGTAATATCGACTGGAC-GATCCCCAGTTTGTT--TCCAGA 39 ** * ** ** ** *** ** * *** * consensus_2588#0 AGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGT 180 consensus_2588#1 GCTT--CGCTAATCATTGCGACACTG-CGTTCGCTTCTGCTGGCATCGCGGATCTCCCCT 96 ** * * * * ** * * *** **** * * * ** * * consensus_2588#0 GACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGG-AATGTGGCC 239 consensus_2588#1 CTCAGCTCGATCCCATCATGGAGATCACTCG--------CACCATTATTGCAGTCTGTCT 148 ** *** * * ** *** ** * * * *** ** * * * ** * consensus_2588#0 TGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCAT 299 consensus_2588#1 TGGCCTTGTGGTGG-CGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCA--AA 205 ** **** * * * * * *** ** * * * ** * consensus_2588#0 CAACGATTACAAGCGGCACTTTCAGCCCACAGAA---ACCTTTGTATCAGTACCAAGAGA 356 consensus_2588#1 CATGGATTTGAAG-GACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTA 264 ** **** *** * * ** ** ** * ** * ** * * consensus_2588#0 CGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTT 416 consensus_2588#1 CTTTTGTCTGCAGTTTGGGCTACA---CTACTGCAGGAGGGGTTGGG--GTTGTTACGTG 319 * * * * ***** * * * **** * ** * *** ** consensus_2588#0 CACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTG 476 consensus_2588#1 TACT-GCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTC 378 *** * *** * ** * *** * ** ** ******* ********** consensus_2588#0 CTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAAC 536 consensus_2588#1 CTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTTGGTGATAAAA 438 ************************** ******** *** *** *************** consensus_2588#0 TTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAG 596 consensus_2588#1 TTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAG 498 ******************* **************************************** consensus_2588#0 ATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGT---TCACACCCAA 653 consensus_2588#1 ATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTG 558 **** ******************************* *** *** *** * consensus_2588#0 AAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAG 713 consensus_2588#1 GCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGT---ATATAATTATCGAGAAGTTG 615 ** ******* * * ***** ** **** ** * ** * consensus_2588#0 TGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCC 773 consensus_2588#1 TACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTG 675 * ** * ** * * * * ** * ** * * * **** consensus_2588#0 TGAATGGTCAGTGGACGCCA 793 consensus_2588#1 AAGATGGAACATTCACACCA 695 **** * ** *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |