These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 491 fasta sequence [AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC-AGAGTTTTTCCACAGATTTTCCATAGTCAT-CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATGGCCTACATGAAACCTGGTGCTGCAAAGCACACACCAGTG] [+] EMBL CA333145 [AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAAACTGGGCACTGTTCTGTGGAACACCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATTGCCTACATGAAACCTGGTGCTGCAAAGCACACACCAGTG] [+] EMBL FR0060353 [ ACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTCCTGA ] [+] EMBL FR0061190 [ ATTCCGACAGACACCTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCAT CGGTGTCCAGTTGCCTGAAAGCACATTTTTGAG ] [+] EMBL FR0061209 [ GACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCCGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTNTCCATAGTCAT CGGGGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTC ] [+] EMBL FR0061131 [ GTTGTGGGGTGACCACGGTCAGGAGTCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCCAAGAGTTTTT ] [+] EMBL FR0061311 [ TGACCGCGGGTAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGATTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTTGTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGTTTTTCCACAGATTTTCCATAGTCATCCGGTGTCCAGTTGCCTtg ] [+] EMBL FR0061682 [ ACCTATTGCAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAGCACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTGAGGAGAGCCCAGACAAACTTTTGGACAATGATCC AGAGGTTTTCCACAGATTTTCCATAGTCAT CGGTGTNCAGGTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGGGCGCCTCTGTACCTTTTCTGATCTGTAAAACTTACGGCCTGATGG ] consensusID : consensus_2594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTTCTGATCTGTAAAACTACGGGCTGAT] [+] EMBL FR0061173 [AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGGAATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATACTGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTACTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAGTCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCGCCTCTGTACCTTTTCTGATCTGTAAAACTACGGGCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2594#0 ---------AAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGG 51 consensus_2594#1 AAGCGTCCAAAGAACAAAAATACGACAGACAACTGAGGTTGTGGGGTGACCACGGTCAGG 60 *************************************************** consensus_2594#0 AATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATAC 111 consensus_2594#1 AATCACTGGAGAATTCACACGTTTGCCTCATTAACGCCACAGCAACTGGAACAGAGATAC 120 ************************************************************ consensus_2594#0 TGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTA 171 consensus_2594#1 TGAAGAATTTGGTGCTGCCAGGTATTGGAGCATTCACAATAGTGGATGGACACGTTGTTA 180 ************************************************************ consensus_2594#0 CTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGAACAGAG 231 consensus_2594#1 CTGGAGAAGACGTCGGAAACAACTTTTTTCTAAGCAACAGCAGCATCGGAAAGA------ 234 ****************************************************** consensus_2594#0 CACAGGCTGCCACAGAGTTGCTACAAGAACTCAACAGTGATGTCTCTGGAAACTTTGTTG 291 consensus_2594#1 ------------------------------------------------------------ consensus_2594#0 AGGAGAGCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAG 351 consensus_2594#1 ------GCCCAGACAAACTTTTGGACAATGATCCAGAGTTTTTCCACAGATTTTCCATAG 288 ****************************************************** consensus_2594#0 TCATCGGTGTCCAGTTGCCTGAAAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCG 411 consensus_2594#1 TCATCGGTGTCCAGTTGCCTGANAGCACATTTTTGAGACTGGGCACTGTTCTGTGGAGCG 348 ********************** ************************************* consensus_2594#0 CCTCTGTACCTTTCCTGATCTGAAAAACTTACGGCCTGATGGCCTACATGAAACCTGGTG 471 consensus_2594#1 CCTCTGTACCTTTTCTGATCTGTAAAACT-ACGGGCTGAT-------------------- 387 ************* ******** ****** **** ***** consensus_2594#0 CTGCAAAGCACACACCAGTG 491 consensus_2594#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |