These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 920 fasta sequence [ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC-CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGGCGCGT] [+] EMBL BU805084 [ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC TGAGAAGACCATGTCTCACTACGTACCAGTGC ] [+] EMBL BU806829 [ AGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC TGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGCGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGAT ] [+] EMBL BU806575 [ CAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTG ] [+] EMBL FR0063352 [ CACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAGAAGGTACAAAGAAGACGC CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGGGTGTC ] [+] EMBL FR0064016 [ GATGAAGAACATCGTCAGCCAGAAAAGGCACAAAGAAGACGCGCGAGAAGACCATGTCTCACTACGTACCAGCGCTGGACACTCCAGAGAT CAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGGCGCGT] consensusID : consensus_2595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence [TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC-TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAA] [+] EMBL BU805125 [TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTG ] [+] EMBL FR0063375 [ CACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGGAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGCAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACATGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTTGCCCACAGACACG ] [+] EMBL FR0063854 [ GAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGAC GCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2595#0 ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAG 60 consensus_2595#1 ----TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAG 56 ********************************************* ********** consensus_2595#0 ATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACC 120 consensus_2595#1 ATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACC 116 ************************************************************ consensus_2595#0 AGCAAACTGTCCAGCCAG------------------------------------------ 138 consensus_2595#1 AGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTAC 176 ****************** consensus_2595#0 ------------------------------------------------------------ consensus_2595#1 CATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGT 236 consensus_2595#0 ---GTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAG 195 consensus_2595#1 AATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAG 296 ********************************************************* consensus_2595#0 ACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGG 255 consensus_2595#1 ACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGG 356 ************************************************************ consensus_2595#0 AAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAA 315 consensus_2595#1 AAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAA 416 ************************************************************ consensus_2595#0 CTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTG 375 consensus_2595#1 CTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTG 476 ************************************************************ consensus_2595#0 GAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATG 435 consensus_2595#1 GAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATG 536 ************************************************************ consensus_2595#0 AGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATG 495 consensus_2595#1 AGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATG 596 ************************************************************ consensus_2595#0 GACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATG 555 consensus_2595#1 GACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATG 656 ************************************************************ consensus_2595#0 AAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGCCGAGAAGACCATGTCTCACTAC 615 consensus_2595#1 AAGAACATCGTCAGCCAGAAA--------------------------------------- 677 ********************* consensus_2595#0 GTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGC 675 consensus_2595#1 ------------------------------------------------------------ consensus_2595#0 ACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTG 735 consensus_2595#1 ------------------------------------------------------------ consensus_2595#0 GACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATAT 795 consensus_2595#1 ------------------------------------------------------------ consensus_2595#0 CACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACA 855 consensus_2595#1 ------------------------------------------------------------ consensus_2595#0 GAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGG 915 consensus_2595#1 ------------------------------------------------------------ consensus_2595#0 CGCGT 920 consensus_2595#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |