These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1205 fasta sequence [GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATCTATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCACTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGCTGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGGAAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAGAATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTAATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTGCCAGT] [+] EMBL CA332704 [GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATCTATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCACTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCCGCCACGCGTGGAATCGTGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAAC ] [+] EMBL CA333206 [ GAAGACTTCGGTATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGA ] [+] EMBL BU805157 [ GATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGG ] [+] EMBL CA590764 [ TGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCACGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGG ] [+] EMBL CA590937 [ GTCAGCCAGACATCCGCGGGTTTTACTGCCGAATTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACG AGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGTAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTT ] [+] EMBL FR0059603 [ TCCCGTTCATATCCTTCTTGCCATGGGGACACCCCCTCTACATTCCTGGACTAACCCCCNTTGACTGACCAGAGTCCGCGAATTCAAGCCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGGTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGGTTCTGCTGGAACCCATCACCTGCCACGCGGGGAATCGCGACCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGGGGCAACCAGGGGCTAAAGACCCATGAGCTGGGAGAGCA ] [+] EMBL BU808094 [ cAGACGCCTCCAATCGGGGAAAACAG AGAGTTCCACTTCAAGACCACACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGAATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATT ACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGCACCCTAATAATATTCTGCTGGCCGCTGGATCC ] [+] EMBL FR0056902 [ TGGGGAACACGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGCTGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGGAAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAGAATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTAATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTGCCAGT] consensusID : consensus_2603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAG] [+] EMBL CA591069 [GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCAGCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTTCTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTCCGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGGCTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCACACCCAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGAAGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAGGTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCTACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACCGAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCGCTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACATCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2603#0 GCTTTGCTTCGATGTAACGTTTCCACCTCATCTTTGTTCATTCAAATTATATGGTTAATC 60 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 TATATGACGTTTTGGGACAACTTGTGCGCTAGGTGGTAGTGTTTGCAACCGGTTGGTTCA 120 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 CTTTGGATGTTTCTATTTGAACCACTAGAGGAGCCCTTTGGCGTCATAGGAAGACTTCGG 180 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 TATAGTGGGATTTTACAGTGGAGCGTTGTTGCTAGCGCGATGATGCTAAGCTAGCTGTCA 240 consensus_2603#1 ---------------------------GTTGCTAGCGCGATGATGCTAAGCTAGCTGTCA 33 ********************************* consensus_2603#0 GCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTT 300 consensus_2603#1 GCCAGACATCCGCGGGTTTTACTGCCGAGTTAGCTGCCAGATGCTCCCGGTCATATCCTT 93 ************************************************************ consensus_2603#0 CTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTC 360 consensus_2603#1 CTTGCCATCTTGACACCCCCTCTACATTCCTGGACGAATTCGTGTTGACTGACCAGAGTC 153 ************************************************************ consensus_2603#0 CGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGG 420 consensus_2603#1 CGCGAATTCAAGTCCATTCCAGAGCTAACCTTTCCCCCATAGCGTGACTAAGCTTGCCGG 213 ************************************************************ consensus_2603#0 CTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCAC 480 consensus_2603#1 CTAACGAGGGTGAACACTCGGAGAACCGGACTGACGAGCAGAGTTCCACTTCAAGACCAC 273 ************************************************************ consensus_2603#0 ACCCAGGCAAGATGTCCCTTCATCAGTTTCTGCTGGAACCCATCACCTGCCACGCGTGGA 540 consensus_2603#1 ACCCA------------------------------------------------------- 278 ***** consensus_2603#0 ATCGCGATCGGACACAAATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGA 600 consensus_2603#1 ----------------AATTGCCATCAGTCCCAATAACCACGAAGTTCATATCTACAAGA 322 ******************************************** consensus_2603#0 AGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAG 660 consensus_2603#1 AGAGTGGCAACCAGTGGCTAAAGACCCATGAGCTGAAAGAGCACAATGGACACATAACAG 382 ************************************************************ consensus_2603#0 GTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCT 720 consensus_2603#1 GTATTGACTGGGCTCCTAAAAGTGACCGTATAGTGACATGCGGAGCCGACCGTAATGCCT 442 ************************************************************ consensus_2603#0 ACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACC 780 consensus_2603#1 ACGTATGGTCGCAGAAGGAGGGGGTGTGGAAGCCCACACTGGTCATCCTCAGGATCAACC 502 ************************************************************ consensus_2603#0 GAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCG 840 consensus_2603#1 GAGCTGCCACCTTTGTCAAGTGGTCTCCGCTGGAGAACAAGTTCGCGGTTGGCAGCGGCG 562 ************************************************************ consensus_2603#0 CTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACA 900 consensus_2603#1 CTCGCCTCATTTCTGTCTGCTACTTTGAGTCGGAGAACGACTGGTGGGTGAGCAAGCACA 622 ************************************************************ consensus_2603#0 TCAAGAAGCCTGTCCGCTCCACCATCCTCAGTCTGGACTGGGACCCTAATAATATTCTGC 960 consensus_2603#1 TCAAG------------------------------------------------------- 627 ***** consensus_2603#0 TGGCCGCTGGATCCTGTGACTTCAAATGCAGGGTGTTCTCAGCCTACATTAAGGAGGTGG 1020 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 AAGAGAAACCAGGTCCCACACCCTGGGGCAGCAAGATGCCATTTGGGGCTGTTCTTGCAG 1080 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 AATTTGGCGGAGCGGGTGGAGGGGGCTGGGTCCATTCAGTCTCTTTCTCAGCCTCTGGTA 1140 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 ATCGCCTGGCCTGGGTCAGTCACGACAGCACTGTTACTGTGGGGGACAGTTCTAAGACTG 1200 consensus_2603#1 ------------------------------------------------------------ consensus_2603#0 CCAGT 1205 consensus_2603#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |