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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1180 fasta sequence
[AGTTGGCCGGACGGGACTAAACCGCAAAAATGGTGGCCTTCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGGACAGCCTGCGGAAAATACTACAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAACAGAAAAAAAAAAAAAAAAAAAACCGAGACTAGTTCCTCGTGCCGAATTCGGCACGAGCTCACACAGGAGTCATGGCAGACACCGAAGATCTGGTACAGAAAGCCAAACTGGCTGAGCAAGCTGAGCGCTATGACGACATGGCTGCGAGCATGAAGGCCGTGACAGAGAGCCAGCCCAAACTCAAGAGCGATGAGCGCAACCTGCTGTCGGTTGCCTACAAGAATGTGGTGGGTGCCCGGAGGTCCTCCTGGAGGGTGGTTTCCAGCTTGGAACACAAGTCTGACGGCAACTGGAAGACCCCGTTGTCTGTGGAATACAGGAAACAGATCGAGAAGGAGCTGAATGAAATCTGCACCGAAGTGCTGCATCTGCTGGATAAATATCTGATCCCTAATGCCGACGACACCGACAGTGAAGTCTTCTATTTGAAAATGAAAGGAGACTACTACCGCTACCTGGCAGAGGTGGCTACTGAAGACACAAAGGAGGATATCATCCAAAACTCGGAAGCGGCCTACCAAGCCGCGTATAACATGAGCTCGGAAAACATGGCAGCGACGCATCCCATCCGATTAGGACTTGCGCTCAATTTCTCTGTCTTCTACTATGAGATCGTTAACTCACCGGAAAAAGCCTGCAGTCTGGGCAAAACGGCCTTCGATGAAGCCATCTCCATGCTGGATACTCTTAAGTCCGATTCCCAGAAAGACAGCACCTTGATCATGCAGCTGCTCCCTGACAACCTGACGCTGGGGGCG]
[+] EMBL CA847282 [AGTTGGCCGGACGGGACTAAACCGCAAAAATGGTGGCCTTCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGCCTGTGGAAAATACTACAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAACAGAAAAAAAAAAAAAAAAAAAACCGAGACTAGTTCCTCGTGCCGAATTCGGCACGAGCTCACACAGGAGTCATGGCAGACACCGAAGATCTGGTACAGAAAGCCAAACTGGCTGAGCAAGCTGAGCGCTATGACGACATGGCTGCGAGCATGAAGGCCGTGACAGAGAGCCAGCCCAAACTCAAGAGCGATGAGCGCAACCTG ]
[+] EMBL CA844850 [ CCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCTTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGACAAGATTTTTTTTTACCACTACAGNGGAAACAACATTGAGATTGGTACAGCCTGCGGAAAATACTAGAGGGTGTGCACACTGGGCATTATCGAACCCGGCGATTCTGACATCATCAGGAGCATGCCAGAGTAG ]
[+] EMBL FR0056432 [ GTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAACATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAGATCTGAGATTGAGTATTATGCCATGGTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTTGGAa ]
[+] EMBL CA330623 [ AAATACTACAGGGTGTGCATTTTGCCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAAC ]
[+] EMBL CA846374 [ ATGCCTTACACCGAAGATCTGGTACAGAAAGCCAAACTGGCTGAGCAAGCTGAGCGCTATGACGACATGGCTGCGAGCATGAAGGCCGTGACAGAGAGCCAGCCCAAACTCAAGAGCGATGAGCGCAACCTGCTGTCGGTTGCCTACAAGAATGTGGTGGGTGCCCGGAGGTCCTCCTGGAGGGTGGTTTCCAGCTTGGAACACAAGTCTGACGGCAACTGGAAGACCCCGTTGTCTGTGGAATACAGGAAACAGATCGAGAAGGAGCTGAATGAAATCTGCACCGAAGTGCTGCATCTGCTGGATAAATATCTGATCCCTAATGCCGACGACACCGACAGTGAAGTCTTCTATTTGAAAATGAAAGGAGACTACTACCGCTACCTGGCAGAGGTGGCTACTGAAGACACAAAGGAGGATATCATCCAAAACTCGGAAGCGGCCTACCAAGCCGCGTATAACATGAGCTCGGAAAACATGGCAGCGACGCATCCCATCCGATTAGGACTTGCGCTCAATTTCTCTGTCTTCTACTATGAGATCGTTAACTCACCGGAAAAAGCCTGCAGTCTGGGCAAAACGGCCTTCGATGAAGCCATC ]
[+] EMBL CA846526 [ ATGTAGGCCGTGACAGAGAGCCAGCCCAAACTCAAGAGCGATGAGCGCAACCTGCTGTCGGTTGCCTACAAGAATGTGGTGGGTGCCCGGAGGTCCTCCTGGAGGGTGGTTTCCAGCTTGGAACACAAGTCTGACGGCAACTGGAAGACCCCGTTGTCTGTGGAATACAGGAAACAGATCGAGAAGGAGCTGAATGAAATCTGCACCGAAGTGCTGCATCTGCTGGATAAATATCTGATCCCTAATGCCGACGACACCGACAGTGAAGTCTTCTATTTGAAAATGAAAGGAGACTACTACCGCTACCTGGCAGAGGTGGCTACTGAAGACACAAAGGAGGATATCATCCAAAACTCGGAAGCGGCCTACCAAGCCGCGTATAACATGAGCTCGGAAAACATGGCAGCGACGCATCCCATCCGATTAGGACTTGCGCTCAATTTCTCTGTCTTCTACTATGAGATCGTTAACTCACCGGAAAAAGCCTGCAGTCTGGCCAAAACGGCCTTCGATGAAGCCATCTCCATGCTGGATACTCTTAAGTCCGATTCCCAGAAAGACAGCACCTTGATCATGCAGCTGCTCCCTGACAACCTGACGCTGGGGGCG]
consensusID : consensus_2643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 478 fasta sequence
[GCACGAGGACTTAACTCGCAGTTGGCCGGTCGGCACTAAACCGCAAAAATGGTGGCCGCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGCCTGTGGAAAATACTA-CAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAACAGAANATTGGAATCATCTAAACGGTATAAAAGGGATAC]
[+] EMBL CA340973 [GCACGAGGACTTAACTCGCAGTTGGCCGGTCGGCACTAAACCGCAAAAATGGTGGCCGCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGCCTGTGGAAAATACTA CAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAACAG ]
[+] EMBL FR0055176 [ CGCAAAAATGGTGGCCGCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGCCTGTGGAAAATACTA CAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCG ]
[+] EMBL FR0056500 [ AAAATGGTGGCCGCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGGAAACAACTGCCCAGGTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGGCAAGACTGGTGTCCACCACTACAGTGGGAAGAACATTGAGCTTGGCACAGCCTGTGGCAAATACTAGCAGGGTGTGGACACT ]
[+] EMBL FR0056284 [ GCAAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAGTGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAAACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGCCATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGCCTGTGGAAAATACTA CAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACATCATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTTGTTAATAAAATCGGTGTAAACAGAANATTGGAATCATCTAAACGGTATAAAAGGGATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2643#0 -------------------AGTTGGCCGGACGGGACTAAACCGCAAAAATGGTGGCCTTC 41
consensus_2643#1 GCACGAGGACTTAACTCGCAGTTGGCCGGTCGGCACTAAACCGCAAAAATGGTGGCCG-C 59
********** *** *********************** *
consensus_2643#0 AAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAG 101
consensus_2643#1 AAAGAAAACGAAAAAGTCCATGGAGTCTATCAACTCTCGTCTCCAGCTGGTGATGAAGAG 119
************************************************************
consensus_2643#0 TGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAA 161
consensus_2643#1 TGGAAAATATGTACTGGGCTACAAACAGTCCCAGAAGATGATCCGTCAGGGAAAAGCCAA 179
************************************************************
consensus_2643#0 ACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGC 221
consensus_2643#1 ACTGGTGATCCTGGCAAACAACTGCCCAGCTCTCAGGAAATCTGAGATTGAGTATTATGC 239
************************************************************
consensus_2643#0 CATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGGACAGC 281
consensus_2643#1 CATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATTGAGCTTGGCACAGC 299
****************************************************** *****
consensus_2643#0 CTGCGGAAAATACTACAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACAT 341
consensus_2643#1 CTGTGGAAAATACTACAGGGTGTGCACACTGGCCATTATCGACCCCGGCGATTCTGACAT 359
*** ********************************************************
consensus_2643#0 CATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTT 401
consensus_2643#1 CATCAGGAGCATGCCAGATCAGCAGCAGCCTCCTCAGTAGAACTGTTCCCCCACCACCTT 419
************************************************************
consensus_2643#0 GTTAATAAAATCGGTGTAAACAGAAAAAAAAAAAAAAAAAAAACCGAGACTAGTTCCTCG 461
consensus_2643#1 GTTAATAAAATCGGTGTAAACAGAANATTGGAATCATCTAAACGGTATAAAAGGGATAC- 478
************************* * ** * *** * * ** *
consensus_2643#0 TGCCGAATTCGGCACGAGCTCACACAGGAGTCATGGCAGACACCGAAGATCTGGTACAGA 521
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 AAGCCAAACTGGCTGAGCAAGCTGAGCGCTATGACGACATGGCTGCGAGCATGAAGGCCG 581
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 TGACAGAGAGCCAGCCCAAACTCAAGAGCGATGAGCGCAACCTGCTGTCGGTTGCCTACA 641
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 AGAATGTGGTGGGTGCCCGGAGGTCCTCCTGGAGGGTGGTTTCCAGCTTGGAACACAAGT 701
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 CTGACGGCAACTGGAAGACCCCGTTGTCTGTGGAATACAGGAAACAGATCGAGAAGGAGC 761
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 TGAATGAAATCTGCACCGAAGTGCTGCATCTGCTGGATAAATATCTGATCCCTAATGCCG 821
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 ACGACACCGACAGTGAAGTCTTCTATTTGAAAATGAAAGGAGACTACTACCGCTACCTGG 881
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 CAGAGGTGGCTACTGAAGACACAAAGGAGGATATCATCCAAAACTCGGAAGCGGCCTACC 941
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 AAGCCGCGTATAACATGAGCTCGGAAAACATGGCAGCGACGCATCCCATCCGATTAGGAC 1001
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 TTGCGCTCAATTTCTCTGTCTTCTACTATGAGATCGTTAACTCACCGGAAAAAGCCTGCA 1061
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 GTCTGGGCAAAACGGCCTTCGATGAAGCCATCTCCATGCTGGATACTCTTAAGTCCGATT 1121
consensus_2643#1 ------------------------------------------------------------
consensus_2643#0 CCCAGAAAGACAGCACCTTGATCATGCAGCTGCTCCCTGACAACCTGACGCTGGGGGCG 1180
consensus_2643#1 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |