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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 635 fasta sequence
[GGTCCCTGGTGTCTCCAATGTTGTCGTCCACGATGTCATCGAGCAGTGCTTTAGNCACCATGCATGTTCGGAAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCGCAGAGCCTCATGTGTGGTCACCAGGATGTGATGGTGGCAGGTGGCATGGAGAGCATGTCCAATGTCCCCTATGTCATGTCCAGAGAGAGTCCAGCCTATGGAGGAGTGAAAATGGGAGATCTCATTGTCAAAGATGGACTCACTGACGTTTACAACAAATTCCACATGGGCAACTGTGCAGAGAACACGGCCAAGAAGAAACAGATCAGC]
[+] EMBL BU804709 [GGTCCCTGGTGTCTCCAATGTTGTCGTCCACGATGTCATCGAGCAGTGCTTTAGTCACCATGCATGTTCGGAAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCGCAGAGCCTCATGTGTGGTCACCAGGATGTGATGGTGGCAGGTGGCATGGAGAGCATGTCCAATGTCCCCTATGTCATGTCCAGAGAGAGTCCAGCCTATGGAGGAGTGAAAATGGAAGATCTCATTGTCAAAGATGGACTCATTGACGTTTACAACAAATTCCACATGGGCAACTGTGCAGAGAACACGGCCAAGAAGAAACAGATCAGC]
[+] EMBL FR0062574 [ TTAGNCACCATGCATGTTCGGAAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCGCAGAGCCTCATGTGTGGTCACCAGGATGTGATGGTGGCAGGTGGCATGGAGAGCATGGCCAAT ]
[+] EMBL FR0062451 [ AGACACCATGCATGTTCGGAAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTTACTCCAGGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATG ]
[+] EMBL FR0062704 [ AAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTGACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTTTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGGCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTTGCCACTCCAGg ]
[+] EMBL FR0062944 [ AAGTTACTCCACGCGCACGTCGCTCAGCGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCG ]
[+] EMBL FR0062624 [ AGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGCCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCCGCGACAGAGCAGGAATTGCTCCTGAAGAAGGGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACA ]
[+] EMBL FR0062842 [ CACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTG ]
[+] EMBL FR0062335 [ GACCCCTATGGGTTCTTTCCGGAGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCGCAGAGCCTCATGTGTGGCCACCAGGATGTGATGGCGGCAGGTGTCATGGAGAGCATGTCCAATGTCCCCTA ]
[+] EMBL FR0063087 [ TATGGGGTCTTTCCGGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGGGTGGCTCGGTGGCCATTAAAGGGGCCGTCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTCAGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCGCCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGGCAGCGCAGAGCCTCATGTGTGGTCACCAGGATGTGATGGTGGCAGGTGGCATGGAGAGCATGTCCAATGTCCCCTATGTCATGTCCAGAGAGAGTCCAGCCTATGGAGGAGTGAAAATGGGAGATCTCATTGTCAAAGATGGACTCACTGACGTTTACAACAAA ]
consensusID : consensus_2645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence
[ATGTTCGGAAGTGTAAAGGCCTGATTTACAGCTACCTCACGAAAAGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGACCCGGACCCCTATGGGGCTTTTCCGGGCAGCCTGCCGCGTGCCGCCCCCCGTTGCCTCGGGGCAT]
[+] EMBL FR0060716 [ATGTTCGGAAGTGTAAAGGCCTGATTTACAGCTACCTCACGAAAAGTTACTCCACGCGCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGACCCGGACCCCTATGGGGCTTTTCCGGGCAGCCTGCCGCGTGCCGCCCCCCGTTGCCTCGGGGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2645#0 GGTCCCTGGTGTCTCCAATGTTGTCGTCCACGATGTCATCGAGCAGTGCTTTAGNCACCA 60
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 TGCATGTTCGGAAGTGTAAAGGCCTGGTTTACAGGTACCTCGCGAAAAGTTACTCCACGC 120
consensus_2645#1 ---ATGTTCGGAAGTGTAAAGGCCTGATTTACAGCTACCTCACGAAAAGTTACTCCACGC 57
*********************** ******* ****** ******************
consensus_2645#0 GCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGGCCCGGACCCCTATGGGGTCTTTCC 180
consensus_2645#1 GCACGTCGCTCAACGAGGTGTTTATCGTGAGCGCGACCCGGACCCCTATGGGGCTTTTCC 117
*********************************** ***************** *****
consensus_2645#0 GGGGCAGCCTGGCCGCGGTGCCGGCCCCCCGGCTGGGCTCGGTGGCCATTAAAGGGGCCG 240
consensus_2645#1 GGG-CAGCCTG-CCGCG-TGCCG-CCCCCCG--TTGCCTCGGGG--CAT----------- 158
*** ******* ***** ***** ******* * * ***** * ***
consensus_2645#0 TCGACAGAGCAGGAATTGCTCCTGAAGAAGTGAAGGAGGTCTACATGGGGAACGTGCTTC 300
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 AGGCCGGAGAGGGCCAGGCCCCCACCAGACAGGCCCTGCTGGGTGCAGGCTTAACACTCG 360
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 CCACTCCAGCAACAACTATTAACAAAGTGTGTGCCTCTGGGATGAAGGCCATCATGATGG 420
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 CAGCGCAGAGCCTCATGTGTGGTCACCAGGATGTGATGGTGGCAGGTGGCATGGAGAGCA 480
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 TGTCCAATGTCCCCTATGTCATGTCCAGAGAGAGTCCAGCCTATGGAGGAGTGAAAATGG 540
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 GAGATCTCATTGTCAAAGATGGACTCACTGACGTTTACAACAAATTCCACATGGGCAACT 600
consensus_2645#1 ------------------------------------------------------------
consensus_2645#0 GTGCAGAGAACACGGCCAAGAAGAAACAGATCAGC 635
consensus_2645#1 -----------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |