|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1081 fasta sequence
[CAGATCAGAGTTAGACCAGATCATAGTTAGACTGGATCACAGTTAGACCAGATCAGAGTTAGACCGGATCAGAGTTAGACCGGATCACAGTTAGACCGGATCACAGTT-AGACCAGATCAGAGTTAGACCGGATCAGAGTTGGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCAGCCTTGGTCACAGACTGGCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGTCCTCGGTGTCTCTGCTGACAGTCAACATAAAGACATTGGTATCGGGGGCTGTTCAGACTTGGATGGAGAAGACATGTATGGTCTGGATAGTGAAGAGCGTTGGTACGCAGACTTCAGTAAAGGAGAAGGAGTCGACGGCACCCCTCCGTTCATAGATCCTGTCAGATA-GT-AGAAGGCACCTACAGCACAGCTGTGGCTGATCTGCAGACCTGTAAAACCAACCTGGATATTGCTCGTAAAGCCCACAAAGACATGCCGCCAGAGACAGTTGCTCCCACCAGTCCAATGATCTACACCAAAGAGGAAGTCCAGCTGAGTCAGCAGAACACTCTGATCTGTTTCGTGACCGGCTTCTATCCGGCTCCCGTTAACGTCTCCTGGACCAGGAACGGAGAGCACGTGACCCAGGGGACCAGCATCAACGTTCCCTACCCCAACAAAGAGGGAACCTTCACCCAGATCTCCAGACTGGCCTTCGTCCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGCGCTGAGCGGCCTGGACACCAGGATGTGGACTGTGGAGGTGCAGCAGCCTGGAGTTGGGCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGGTCTCCTCGGGGTCGCTGCAGGGACCTTCTTCCTCATCAAAGGGAACGAGTGCAGATGATCCAGAGGGTCCAGAGGATCCAGAGGATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCACTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATCTTCAAATA]
[+] EMBL FR0061177 [CAGATCAGAGTTAGACCAGATCATAGTTAGACTGGATCACAGTTAGACCAGATCAGAGTTAGACTGGATCACAGTTAGACCAGATCACAGTTAGACCGGATCACAGTT AGACCAGATCAGAGTTGGACCAGATCAGAGTTGGACCGGATCACAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCAGCCTTGGTCACAGACTGTCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGTCCTCGGNGTCTCTGCTGACAGGCAACATGAAGACATCAATATCGTGNGCTGTTCAGACTTGGATGGAGAATTCATGTAT ]
[+] EMBL CA846809 [ GACCAGATCAGAGTTAGACCGGATCAGAGTTGGACCGGATCACAGTTAGACCGGATCACAGTT AGACCAGATCAGAGTTAGACCGGAGCAGAGTTAGACCGGAT CAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCAGCCTTGGTCACAGACTGGCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGTCCTCGGTGTCTCTGCTGACAGTCAACATAAAGACATTAGTATCAGAGGCTGTTCAGACTTGGATGGAGAAGACATGTATGGTCTGGATAGTGAAGAGCTTTGGTACGCAGACTTCAGTAAAGGAGAAGGAGTCTACGGCACCCCTCCGTTCATAGATCCTTTCAGATATGT AGAAGGCACCTACAGCACAGCTGTGGCTAATCTGCAGGTCTGTAAAACCAACCTGGATAATGCTCGTAAAGGCAACAAAGACATGCCGCCAGGGACAGTTGCTCCCACCAGTCCAATGATCTACACCAAAGAGGAAGTCCAGCTGAGTCAGCAGAACACTCTGGTCTGTTTCGTGACCGGCTTCTATCCGGCTCCCGTTAACGTCTCCTGGACCAGG ]
[+] EMBL FR0059374 [ GACCGGATCAGAGTTAGTTTTGATCACAGTTAGACCGGATCACAGTTGGGACCGTATCACAGTTAGACCGNATCACACCCCCACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGACCAGCCTTGGTCACAGACTGTCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGTTCTCGGTGTCTCTGCTGACAGTCAACATAAAGGCATTGCTATCGGGGGCTGTTCAGACTTGTATGGAGAAGCCATGTATGGGCTGTATAGTGAAGAGCGTTTGTACGCAGACTTCAGTAAAGGAGAAGGAGTCGACATCAACCCTCCGTTCATAGATCCTGTCACATA TTGAGAAGGCACCTACAGCAC ]
[+] EMBL BU807398 [ GGAGCAGAGTT AGACCAGATCAGAGTTGGACCGGATCATAGTTGGACCAGATCACAGTTAGACCGGATCAGAGTTAGACCGGATCACAGGTAGACCAGATCAGCCTTGGCCACAGACTGGCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGTCCTCGGTGTCTCTGCTGACAGTCAACATAAAGACATTCGTATCAGAGGCTGTTCAGACTTGGATGGTTAAGACATGTTTGGTCTGGATAGTGAAGAGCTTTGGTACGCAGACTTCAGTAAAGGAGTCGGAGTCGACGGCACCCCTCCGTTCATAGATCCTGTCAGAT T TGAAGGCTTCTACAGCACAGCTGTGACTAATCTGCAGATCTGTAAATCCAACATGGATATTGTTCGTAAAGCCCTCAAAGACATGCCGCCAGAGACAGTTGCTCCCACCAGTCCAAT ]
[+] EMBL FR0060112 [ GACCGGATCACAGTTAGACCGGATCAGAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGACCAGCCTTGGTCACAGACTGGCTCAGCTCCACAGGTAGATGATGAAGATGCTGCTCCTCATCCTCTGCTGCGGCCTCGGGGTCTCTGCTGACAGTCAACATAAAGGCATTGCTATCGGGGGCTGTTCAGACTTGGATGGTGAAGCCATGTATGGCCTGTATAGTGAAGAGCGTTGTTACG ]
[+] EMBL CA846902 [ GGCGTCTACAGCCAAGCTGTGACTGAGCTGCAGACCTGTAAAACCAACCTGGATAGTGAGCGTAAAGCCTACAAAGACATGCCGCCAGAGACAGTTGCTCCCACCAGTCCAATGATCTACACCAAAGAGGAAGTCCAGCTGAGTCAGCAGAACACTCTGATCTGTTTCGTGACCGGCTTCTATCCGGCTCCCGTTAACGTCTCCTGGACCAGGAACGGAGAGCACGTGACCCAGGGGACCAGCATCAACGTTCCCTACCCCAACAAAGAGGGAACCTTCACCCAGATCTCCAGACTGGCCTTCGTCCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGCGCTGAGCGGCCTGGACACCAGGATGTGGACTGTGGAGGTGCAGCAGCCTGGAGTTGGCCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGGTCTCCTCGGGGTCGCTGCAGGGACCTTCTTCCTCATCAAAGGGAACGAGTGCAGATGATCCCGAGGATCCAGAGGATCCAGAGGATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCACTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATCTTCAAATA]
[+] EMBL FR0055817 [ ACAGCCAAGCTGTGGCTGATCTGCAGACCTGTAAAACCAGCCTGGATATTACTCGTAAATCCCTCAGAGACATGCCGCCAGAGACAGTTGCTCCCACCAGTCCAATGATCTACACCAAAGAGGAAGTCCAGCTGAGTCAGCAGAACACTCTGATCTGTTTCGTGACCGGCTTCTATCCGGCTCCCGTTAACGTCTCCTGGACCAGGAACGGAGAGCACGTGACCCAGGGGACCAGCATCAACGTTCCCTACCCCAACAAAGAGGGAACCTTCACCCAGATCTCCATACTGGCCTTCGTCCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGCGCTGAGCGGCCTGGACACCATGATGTGGACTGTGGAGGTGCAACAGCCTGGAGTTGGTCCTGCAG ]
[+] EMBL FR0057663 [ AAGAGGAAGTCCAGCTGAGTCAGCAGAACACTCTGATCTGTTTCGTGACCGGCTTCTATGCGGCTCCCGTTAACGTCTCCTGGACCAGGAACGGAGAGCACGTGACCCAGGGGACCAGCATCAACGTTCCCTACCCCAACAAAGAGGGAACCTTCACCCAGATCTCCAGACTGGCCTTCGTCCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGCGCTGAGCGGCCTGGACACCAGGATGTGGACTGTGGAGGTGCAGCAGCCTGGAGTTGGGCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGGTCTCCTCGGGGTCGCTGCAGGGACCTTCTTCCTCATCAAAGGGAACGAGTGCAGATGATCCAGAGGGTCCAGAGG ]
consensusID : consensus_2650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence
[ACCCAGATCTCCAGACTGGCCTTCGACCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGTGCTGAGCGGCCTGGACACCAGGATGTGGTCTGTGGTCGTGCAGCAGCCTGTGGTTGGCCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGATCTCCTCGGTGTCGCTGCAGGGACCTTCTTCCTCATCAAGGGGAACGAGTGCATATGATCCAGAGGATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCACTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATGTCTTCAGATATTAAAAGCCTGAAAAGTGCCGAATTCGGCACGAGGGAACAT]
[+] EMBL FR0055651 [ACCCAGATCTCCAGACTGGCCTTCGACCCCCAGCAGGGAGACATTTACAGCTGCAGGGTCCAACACCCGGTGCTGAGCGGCCTGGACACCAGGATGTGGTCTGTGGTCGTGCAGCAGCCTGTGGTTGGCCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGATCTCCTCGGTGTCGCTGCAGGGACCTTCTTCCTCATCATGGGGAACGAGTGCATCTGATCCAGAGGATCCAGAGGATCCCGCTGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCACTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATGTCTTCAGTTATTACAAGCCTGAAAAGTGCCGAATTCGGCACGAGGGAACAT]
[+] EMBL CA845641 [ GGACCTTCTTCCTCATCAAAGGGAACGAGTGCATATGATCCAGAGGATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCACTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATGTCTTCAAATATTAAAAACCTGAAAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2650#0 CAGATCAGAGTTAGACCAGATCATAGTTAGACTGGATCACAGTTAGACCAGATCAGAGTT 60
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 AGACCGGATCAGAGTTAGACCGGATCACAGTTAGACCGGATCACAGTTAGACCAGATCAG 120
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 AGTTAGACCGGATCAGAGTTGGACCAGATCACAGTTAGACCAGATCACAGTTAGACCAGA 180
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 TCACAGTTAGACCAGATCAGCCTTGGTCACAGACTGGCTCAGCTCCACAGGTAGATGATG 240
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 AAGATGCTGCTCCTCATCCTCTGCTGCGTCCTCGGTGTCTCTGCTGACAGTCAACATAAA 300
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 GACATTGGTATCGGGGGCTGTTCAGACTTGGATGGAGAAGACATGTATGGTCTGGATAGT 360
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 GAAGAGCGTTGGTACGCAGACTTCAGTAAAGGAGAAGGAGTCGACGGCACCCCTCCGTTC 420
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 ATAGATCCTGTCAGATAGTAGAAGGCACCTACAGCACAGCTGTGGCTGATCTGCAGACCT 480
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 GTAAAACCAACCTGGATATTGCTCGTAAAGCCCACAAAGACATGCCGCCAGAGACAGTTG 540
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 CTCCCACCAGTCCAATGATCTACACCAAAGAGGAAGTCCAGCTGAGTCAGCAGAACACTC 600
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 TGATCTGTTTCGTGACCGGCTTCTATCCGGCTCCCGTTAACGTCTCCTGGACCAGGAACG 660
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 GAGAGCACGTGACCCAGGGGACCAGCATCAACGTTCCCTACCCCAACAAAGAGGGAACCT 720
consensus_2650#1 ------------------------------------------------------------
consensus_2650#0 TCACCCAGATCTCCAGACTGGCCTTCGTCCCCCAGCAGGGAGACATTTACAGCTGCAGGG 780
consensus_2650#1 --ACCCAGATCTCCAGACTGGCCTTCGACCCCCAGCAGGGAGACATTTACAGCTGCAGGG 58
************************* ********************************
consensus_2650#0 TCCAACACCCGGCGCTGAGCGGCCTGGACACCAGGATGTGGACTGTGGAGGTGCAGCAGC 840
consensus_2650#1 TCCAACACCCGGTGCTGAGCGGCCTGGACACCAGGATGTGGTCTGTGGTCGTGCAGCAGC 118
************ **************************** ****** **********
consensus_2650#0 CTGGAGTTGGGCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGGTCTCCTCGGGGTCG 900
consensus_2650#1 CTGTGGTTGGCCCTGCAGTCTTCTGTGGTCTGGGTCTGACCTTGGATCTCCTCGGTGTCG 178
*** ***** ********************************** ********* ****
consensus_2650#0 CTGCAGGGACCTTCTTCCTCATCAAAGGGAACGAGTGCAGATGATCCAGAGGGTCCAGAG 960
consensus_2650#1 CTGCAGGGACCTTCTTCCTCATCAAGGGGAACGAGTGCATATGATCCAGAGG-------- 230
************************* ************* ************
consensus_2650#0 GATCCAGAGGATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCA 1020
consensus_2650#1 ----------ATCCAGAGGATCCCGATGTTGTGGATCTTTGTTCCCACAGCTTGTGCTCA 280
**************************************************
consensus_2650#0 CTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGAT--CTTCAA 1078
consensus_2650#1 CTAAGATCACAGTCAGCTCATGTTGATAAATGCTGGATGATTTTTCTCTGATGTCTTCAG 340
**************************************************** *****
consensus_2650#0 ATA----------------------------------------- 1081
consensus_2650#1 ATATTAAAAGCCTGAAAAGTGCCGAATTCGGCACGAGGGAACAT 384
***
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |