These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 530 fasta sequence [CACAGTGAGGGGCCTGTGGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA] [+] EMBL CA846249 [CACAGTGAGGGGCCTGTGGTGGAGGAAACGCCAGGATGCAGATTCTCTTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTAC ] [+] EMBL FR0055331 [ GGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGT ] [+] EMBL FR0055345 [ AACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGACAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGGAAGTGCTG ] [+] EMBL FR0057366 [ CGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGGCAGCCACTTTGACCGTCACTACTGGCGGAA ] [+] EMBL FR0057260 [ GGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGTCACTATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAATGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTATACCACTCCAGGGAAGAACAGGCACACCAGGTAGAAGGTCAAACTGGGTGTGCTCA ] [+] EMBL CA845060 [ CAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTG ] [+] EMBL FR0058439 [ CAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGGTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGAGGATGAAAACGGTAAAATCCACCGTCTGCGACGCG ] [+] EMBL FR0055389 [ TTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGGAAGTG ] [+] EMBL CA330537 [ ATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCTTACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATCCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGC ] [+] EMBL CA847156 [ CCGTCTGCGACGCGAGTGTCCAGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGA ] [+] EMBL CA330881 [ AGCTGACGAGTGCGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCTGACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA] consensusID : consensus_2694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT] [-] EMBL CA588788 [TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCTGGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACCACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTACAAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2694#0 ------CACAGTGAGGG-GCCTGTGGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAA 53 consensus_2694#1 TCGGCCTGTGGTAAAATCGTGCTCTGTGGAGGAAACGCCAGGATGCAGATTTTCGTCAAA 60 ** * * *********************************** consensus_2694#0 ACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTC 113 consensus_2694#1 ACCCTCACGGGGAAGACTATAACCCTTGAGGTTGAGCCTTCGGACACTATTGAAAATGTC 120 ************************************************************ consensus_2694#0 AAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGACCAGCAGAGGCTGATCTTTGCT 173 consensus_2694#1 AAGGCCAAAATCCAGGATAAAGAGGGTATCCCTCCTGAACAGCAGAGGCTGATCTTTGCT 180 ************************************** ********************* consensus_2694#0 GGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACG 233 consensus_2694#1 GGGAAACAGTTGGAGGATGGACGCACACTCTCAGATTACAACATTCAGAAGGAGTCGACG 240 ************************************************************ consensus_2694#0 CTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACC 293 consensus_2694#1 CTTCACTTGGTGCTCAGACTTCGAGGTGGTGCTAAAAAGAGGAAGAAGAAGTCTTACACC 300 ************************************************************ consensus_2694#0 ACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTAC 353 consensus_2694#1 ACTCCAAAGAAGAACAAGCACAAGAGGAAGAAGGTCAAGCTGGCTGTGCTCAAGTACTAC 360 ************************************************************ consensus_2694#0 AAGGTGGATGAAAACGGTAAAATC-CACCGTCTGCGACGCGAGTGTCCAGCTGACGAGTG 412 consensus_2694#1 AAGGTGGATGAAAACGGTAAAATGGCACCGTCTGCGACGCGAGTGTCCAGCTGACGAGT- 419 *********************** ********************************** consensus_2694#0 CGGCGCCGGCGTGTTCATGGCCAGCCACTTTGACCGTCACTACTGCGGAAAGTGCTGTCT 472 consensus_2694#1 ------------------------------------------------------------ consensus_2694#0 GACATACTGCTTCAACAAACCTGAAGACAAATGAATAAAATGAAAACATGTCTGACAA 530 consensus_2694#1 ---------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |