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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 761 fasta sequence
[CTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAGGCCGTTCTTGGGGAAGTTAAACTGTGTGAAAAGATGGCCCAGTTTGATGCTAAGAGGTTTGCTGAAATGCAGCCCAGGAAAGAGGCGCCGGCGAAGAAGGAGAAACAAGGGAAAGAGGCAGCCAAGCCCCAGGAGAAGAAGGAAAAGAAGAAGGAAGAGAAGAAAGAAGAGAAGAAGCCCGCTCCAGAGGAGGAGATGGATATCTGCGACGCCGCTGTGGCTTCTGAGCCCAAAGCTAAGGACCCTTTTGCAGACCTCCCAGAGGGTCCCTTTGTCATGGATGAATTCAAGAGAAAGTATTCCAACGAGGACACCCTAACAGTAGCAGTTCCTTATTTCTGGGAGAACTTTGACCCTGAGGGATACTCCATCTGGTACAGCCAATACAAATATAACGACGAGCTCACGCTTGCCTTCATGAGCTGCAATCTTATCTCAGGCATGTTCCAGCGCCTGGACAAACTCAGAAAAAATGCCTTTGCTAGTGTCATCTTGTTTGGCAAAGACCACAGCAGCAGCATCTCCGGCATCTGGATCGTCAGGGGCCACAAACTGCCTTTCACTCTGTCTACCGACTGGGGAATTGACTACGAATCATATGACTGGAGCAAGATGGATCCCAAAAGCGAGGAGTGCAAAACTATGGTAAAGGAGTACTTTCTTTTTTTTTTTGAATTCAAACACGTGGGCAACACCTTCAAATAG]
[+] EMBL CA846959 [CTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAGGCCGTTCTTGGGGAAGTTAAACTGTGTGAAAAGATGGCCCAGTTTGATGCTAAGAGGTTTGCTGAAATGCAGCCCAGGAAAGAGGCGCCGGCGAAGAAGGAGAAACAAGGGAAAGAGGCAGCCAAGCCCCAGGAGAAGAAGGAAAAGAAGAAGGAAGAGAAGAAAGAAGAGAAGAAGCCCGCTCCAGAGGAGGAGATGGATATCTGCGACGCCGCTGTGGCTTCTGAGCCCAAAGCTAAGGACCCTTTTGCAGACCTCCCAAAGAGTCCCTTTGTCATGGATGAATTCAAGAGAAAGTATTCCAACGAGGACACCCTAACAGTAGCAGTTCCTTATTTCTGGGAGAACTTTGACCCTGAGGGATACTCCATCTGGTACAGCCAATACAAATATAACGACGAGCTCACGCTTGCCTTCATGAGCTGCAATCTTATCTCAGGCATGTTCCAGCGCCTGGACAAACTCAGAAAAAATGCCTTTGCTAGTGTCATCTTGTTTGGCAAAGACCACAGCAGCAGCATCTCCGGCATCTGGATCGTCAGGGGCCACAAACTGCCTTTC ]
[+] EMBL FR0058772 [ TTTTGCAGACCTCCCAGAGGGTCCCTTTGTCATGGATGAATTCAAGAGAAAGTATTCCAACGAGGACACCCTAACAGTAGCAGTTCCTTATTTCTGGGAGAACTTTGACCCTGAGGGATACTCCATCTGGTACAGCCAATACAAATATAACGACGAGCTCACGCTTGCCTTCATGAGCTGCAATCTTATCTCAGGCATGTTCCAGCGCCTGGACAAACTCAGAAAAAATGCCTTTGCTAGTGTCATCTTGTTTGGCAAAGACCACAGCAGCAGCATCTCCGGCATCTGGATCGTCAGGGGCCACAAACTGCCTTTCACTCTGTCTCCCGACTGGGGAATTGACTACGAATCATATGACTGGCGCAA ]
[+] EMBL CA844935 [ GCAGCAGCATCTCCGGAATCTGGATCGAAAGGGGCCACAAACTGACTTTCACTCTGTCTACCGACTGGGGAATTGACTACGAATCATATGACTGGAGCAAGATGGATCCCAAAAGCGAGGAGTGCAAAACTATGGTAAAGGAGTACTTTCTTTTTTTTTTTGAATTCAAACACGTGGGCAACACCTTCAAATAG]
consensusID : consensus_2722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 612 fasta sequence
[TATACGTATCCAGAGAACTGGCGGGCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT-AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA-CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG-GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAACACCCGCACCTTCCTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGCTCCATGCTCTGGCTGTACAAACAGGTCCTTGATCCTTCTTTCCGCCAGCCTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAAGCCGTTCTTGGGGAAGTTAAACTGTGT]
[+] EMBL BU807797 [TATACGTATCCAGAGAACTGGCGGGCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGTCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAACACCCGCACCTTCCTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGCTCCATGCTCTGGCTGTACAAACAGGTCCTTGATCCTTCTTTCCGCCAGCCTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAAGCCGTTCTTGGGGAAGTTAAACTGTGT]
[+] EMBL BU807007 [TATACGTATCCAGAGAACTGGCGGGCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAACACCCGCACCTTCCTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGCTCCATGCTCTGGCTGTACAAACAGGTCCTTGATCCTTCTTTCCGCCAGCCTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCT ]
[+] EMBL BU808045 [TATACGTATCCAGAGAACTGGCGGCCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATTAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAACACCCGCACCTTCCTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGCTCCATGCTCTGGCTGTACAAACAAGGCCTTGATCCTTCTTTCCGCCAGCCTTTTCACAACGTGTCTCGCTGGTTTGTCACC ]
[+] EMBL BU808482 [TATACGTATCCAGAGAACTGGCGGGCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCTAAAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAACACCCGCACCTTCCTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGCTCCATGCTCTGGCTGTACAAACAGGTCC ]
[+] EMBL FR0061183 [ GAGAACTGGCGGGCATTCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAGGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCANGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGT ]
[+] EMBL FR0055521 [ ctGCACTGGCGGGCATGCAATCCACATTTTGCTGCCCAGTATAGTGGAGCTAGCCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGTCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGATTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGTA CCAATCCTGAAGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCGCTCCAGACAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAGCACGCAGGCTACAGAGCAGGTCACGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGGACACCCGCACCTTCCTGGCTGGCGAGAG ]
[+] EMBL FR0062925 [ TCAAGGCCCAAATTGCTGCCCAGTATAGTGGTGCTAGGGTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAA ]
[+] EMBL FR0062713 [ atttCCCAAATTGCTGCCCAGTATAGGGGGGCTAGTCTCAAAGTTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGGACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGGAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCACCCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTGTGGTGAGCTTTGCTGACTCTGAGATCGGCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGACCAG ]
[+] EMBL FR0061695 [ CAGTATAGTGGTGCTAGTCTCAGAGGTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGAA ]
[+] EMBL FR0061629 [ CAGTATAGTGGTGCTAGTCTCAAAGGTGCCAGCGCCGCCCCTGCCTTCACCTTCGGCCAGACAAATCGAAGCCCCGTCTTTCT AAAAAACTTCCCTCTGGGCAAGGTACCTGCCTACCAGGGAAATGACGGCTTCTGTCTGTTTGAGAGTAACGCCATTGCTCATTACTTGGGCAATGATGAACTGCGTGGCA CCAATCCTGAGGCTGCCGCTCAGGTGCTGCAGTG GGTGAGCTTTGCTGACTCTGAGATCGTCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGGCTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTG ]
consensusID : consensus_2722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GCCCTTCAAAAGCCTCTTTCATCGGGTCTAGCATTGCCAGGGCTCGACCACTCGATTACACAGTAAAATGATCACTTTGTTAGAGGTTGAGGTTGAATTGGAATGCTAAGAATTTTTGGAAGCGGACAGGCAAGATTGACATGTGGTAACAGGTCTCTAAATTATTTGGACAAACCCTTAGTTTATTTTATTTTTTAAATGACTTCAGTGTTCCATGAGTATGTTAAATGTAGTTGTCTGTATATGTGATTGTGTGTTTTGCTGTACTTTTCAGACTCTGTATACGTATCCAGAGAACTGGCGGGCATTCAAGGGC]
[+] EMBL FR0060641 [GCCCTTCAAAAGCCTCTTTCATCGGGTCTAGCATTGCCAGGGCTCGACCACTCGATTACACAGTAAAATGATCACTTTGTTAGAGGTTGAGGTTGAATTGGAATGCTAAGAATTTTTGGAAGCGGACAGGCAAGATTGACATGTGGTAACAGGTCTCTAAATTATTTGGACAAACCCTTAGTTTATTTTATTTTTTAAATGACTTCAGTGTTCCATGAGTATGTTAAATGTAGTTGTCTGTATATGTGATTGTGTGTTTTGCTGTACTTTTCAGACTCTGTATACGTATCCAGAGAACTGGCGGGCATTCAAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2722#0 CTTTCACCAACGTGTCTCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAGGCCG 60
consensus_2722#1 ------------------------------------------------------------
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 TTCTTGGGGAAGTTAAACTGTGTGAAAAGATGGCCCAGTTTGATGCTAAGAGGTTTGCTG 120
consensus_2722#1 ------------------TATACGTATCCAGAGAACTGGCGGGCATTCAAGGC----CCA 38
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 AAATGCAGCCCAGGAAAGAGGCGCCGGCGAAGAAGGAGAAACAAGGGAAAGAGGCAGCCA 180
consensus_2722#1 AATTGCTGCCCAGTATAGTGGTGCTAGTCTCAAAGTT---------GCCAGCGCCGCCCC 89
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 AGCCCCAGGAGAAGAAGGAAAAGAAGAAGGAAGAGAAGAAAGAAGAGAAGAAGCCCGCTC 240
consensus_2722#1 TGCCTTCACCTT---CGGCCAGACAAATCGAAGCCCCGTCTTTCTAAAAAACTTCCCTCT 146
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 CAGAGGAGGAGATGGATATCTGCGACGCCGCTGTGGCTTCTGAGCCCAAAGCTAAGGACC 300
consensus_2722#1 GGGCAAGGTACCTGCCTACCAGGGAAATGAC---GGCTTCTGT-CTGTTTGAGAGTAACG 202
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 CTTTTGCAGACCTCCCAGAGGGTCCCTTTGTCATGGATGAATTCAAGAGAAAGTATTCCA 360
consensus_2722#1 CCATTGCTCA------------TTACTTGGGCAATGATGAACTGCGTGGCACCAATCCTG 250
consensus_2722#2 ------------------------------------------------------------
consensus_2722#0 ACGAGGACACCCTAACAGTAGCAGTTCCTTATTTCTGGGAGAACTTTGACCCTGAGG--G 418
consensus_2722#1 AGGCTGCCGCTC-AGGTGCTGCAGTGGGTGAGCTTTG--------CTGACTCTGAGATCG 301
consensus_2722#2 --------------------GCCCTTCAAAAGCCTCTTT----CATCGGGTCTAGCA--- 33
** * * * **
consensus_2722#0 ATACTCCATCTGGTACAGCCAATACAAATATAACGACGAGCTCACGCTTGCCTTCATGAG 478
consensus_2722#1 TCCCTCCAGCCAGCGCATGGGTTTTTCCCACTCTGGGAATCATGCAGTTCAACAAGCAGG 361
consensus_2722#2 TTGCCAGGGCTCGACCACTCGAT-TACACAGTAAAATGATCACTTTGTTAGAGGTTGAGG 92
* * * ** * * * * ** *
consensus_2722#0 CTGCAATCTTATCTCAGG----CATGTTCCAGCGCCTGGACAAACTCAGAAAAAATGCCT 534
consensus_2722#1 CTACAGAGCAGGCCAAGGAGGACGTGAAAAAGGTCCTGACGGTGCTGAACCAACACCTGA 421
consensus_2722#2 TTGAATTGGAATGCTAAGA--ATTTTTGGAAG----CGGACAGGCAAGATTGACATGTGG 146
* * * * * ** * * * *
consensus_2722#0 TTGCTAGTGTCATC-TTGTTTGGCAAAGACCACAGC---AGCAGCATCTCCGGCATCTGG 590
consensus_2722#1 ACACCCGCACCTTC-CTGGTTGGAGAGAGGGTTAGCCTCGCCGACATCGCCGTCGTCTGC 480
consensus_2722#2 TAACAGGTCTCTAAATTATTTGGACAAACCCTTAGTTTATTTTATTTTTTAAATGACTTC 206
* * * * **** * ** * **
consensus_2722#0 ATCGT---CAGGGGCCACAAACTGCCTTTCACTCTGTCTACCGACTGGGGAATTGACTAC 647
consensus_2722#1 TCCATGCTCTGGCTGTACAAACAGGTCCTTGATCCTTCTTTCCGCCAGCCTTTCACCAAC 540
consensus_2722#2 AGTGTTCCATGAGTATGTTAAATGTAGTTGTCTGTATATGTGATTGTGTGTTTTGCTGTA 266
* * ** * * * * * * *
consensus_2722#0 GAATCATATGACTGGAGCAAGATGGATCCCAAAAGCGAGGAGTGCAAAACTATGGTAAAG 707
consensus_2722#1 GTGTC---TCGCTGGTTTGTCACCTGTGTCAATCAGCCTCAGTTCAAAGCCGTTCTTGGG 597
consensus_2722#2 CTTTTCAGACTCTGTATACGTATCCA-GAGAACTGGCGGGCATTCAAGGGC--------- 316
* *** * ** * ***
consensus_2722#0 GAGTACTTTCTTTTTTTTTTTGAATTCAAACACGTGGGCAACACCTTCAAATAG 761
consensus_2722#1 GAAGTTAAACTGTGT--------------------------------------- 612
consensus_2722#2 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |