These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence [AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAAGACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAGATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGACAGAACCTGACAGAATGGATGGAGATCCTGAAGACAGTAGTGGATAGAGACGTCCCTCCGGAAACTTCGCAAATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGTAAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAGTTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACCTCCTGCAACAAAAGAAAAGAGGTGCTGCAAAAGACGATGGGGTTCTGCTACCAGATTCTCATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCTGGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGCTCACGTC] [+] EMBL BU807567 [AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAAGACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAGATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGACAGAACCTGACAGAATGGATGGAGATCCTGAAGACAGTAGTGGATAGAGACGTCCCTCCGGAAACTTCGCAAATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGTAAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATC ] [+] EMBL BU807346 [ CTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAACACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCTCAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGAGTCCTCCAACAGACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGAGAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCTCATGTGTTACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAGTTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACCTCCTGCAACAAAAGAAAAGAGGTGCTGCAAAAGACGATGGGGTTCTGCTACCAGATTCTCATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCTGGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGCTCACGTC] consensusID : consensus_2723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 723 fasta sequence [AGATAAATAGAACTACAACTCCCACTCCGAACATCTCGCCGGATGTTCGTGTTGCACAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC-GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA-GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGGGTGGCTCGGCATCTTGCTTTGCCTTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGCACCTCTGGTGGCT] [+] EMBL CA590366 [AGATAAATAGAACTACAACTCCCACTCCGAACATCTCGCCGGATGTTCGTGTTGCACAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTAT ] [+] EMBL CA590711 [ ACATCTCGCCGGATGTTCGTGTTG CAAATTTGGCGCTGATCTATCCGGGTACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAG ] [+] EMBL FR0060833 [ ACAAATTTGGCGCTGATCTATCCGGGAACTTCATTCACTGGTCCCTTTCGCGCCGGNTAACCGCAGAGCCGCGCGTCCATGTGCGCATC TGCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGAACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGGCACACCCAGGTATGCTTTGTGGCCACTCTGCTGCAGATCACCATGTCTGATCAGGCTGGATTTGCCTGTCAGGCAAGCAGGGGTGATTTATCTG ] [+] EMBL FR0060986 [ TAGGCGGGTTCTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGCAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTGTGANCA ACTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTT ] [+] EMBL FR0060938 [ AGGCGGATACTTCATTCACTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATCTGCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGGGGCCACTCTGCTGCAGATCACCATGGCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATTTGAAGAACATGAAAACTCAGCATTGGGGCGACGGGGATGGTTCAGGCACAGAGACGCCCGT ] [+] EMBL FR0060530 [ GGGGACTTCATGGACTGCTTCCTTT CGGCCGATAACCGTAGAGCCG GCGTCCATGTGC CATC GCCTGGCAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGTATCCCGACGCTTTGGTCGAGGCCCTTGCGGCGACGATGGACCCCAGCCTGCGAGAGGTCGCCTAGAGACAGCTGAACGAGGGGCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGG ] [+] EMBL CA333120 [ CTGCTTCCTTTCGCGCCGGGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGTTTTTGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGGACACCTGCATTCCTCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGAACAAGATTGGCTTCTAT ] [+] EMBL FR0060591 [ TTCGCGCCGGTCAACCGGAGAGCCGCGCGTCCATGTGCGCATC TGCTGGTAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGTAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGCATCGATGGACCCCAGCCTGCGAGAGGCCGCTGAGAGACAGCTTAACGAGGGTCACA ] [+] EMBL BU804853 [ GGTAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTCGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCT TCTTTATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCGTTGGAGCGACGGTGATCGTTCCGCCACACACACGCCCGTCAATAACCTTCCTGACGAGGACCGGGATATTCTCCTACGACGGATC ] [+] EMBL CA589375 [ TAACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGTAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTA ] [+] EMBL BU805500 [ ACCGGAGAGCCGCGCGTCCATGTGCGCATC GCCTGGGAACTGATACACGTCTGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATGACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGGGTGGCTCGGCATCTTGCTTTGCCTTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGCACCTCTGGTGGCT] [+] EMBL FR0058112 [ ATCCGAAAAATCCGAGCCGCAGAGGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGCCCATC ] [+] EMBL FR0058136 [ GCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTGGTCGAGGCCCTGCGGGGCACGATGGACCCTAGCCTGCGAGAGGCCGCCGAGAGACAGCTGAACGAGGGTCACACCCAGGTATGCTTTGTGTCCACTCTGCTGCAGATCACCATGTCTGATCA GCTGGATTTGCCTGTCAGGCAAGCAGGTGTGATTTATCTGAAGAACATGATAACTCAGCATTGGAGCGACGGTGATGGTTCAGGCACAGAGACGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCATCGTGGAGGCCATCATCCACTCTCCCGAGCGCATCAGGGTACAGTTGACCACCTGCATCCATCACATGATCAAGCATGACTACCCTGGCAAGTGGACCACCATCGTGGACAAGATTGGCTTCTATCTGCAGTCCGACAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2723#0 -AACCAGAAGAACGTGCACCTCTGGTGGCTGCCATGCACATCTTCATGCCCATGCTGAAA 59 consensus_2723#1 AGATAAATAGAAC-TACAACTCCCACTCCGAACAT-CTCGCCGG-ATGTTCGTGTTGCAC 57 * * ***** * ** *** * *** * * * *** * ** ** * consensus_2723#0 GACCGCTTTATCCAGCTGCTCCCCGACCACTCCGTCGACTCTGTGCTCGTACAGAAACAG 119 consensus_2723#1 AA--ATTTGGCGCTGAT-CTATCCGGGTACTTCATTCACTGCTTCCTTTCGCG---CCGG 111 * ** * * * ** *** *** * * *** * ** * * * consensus_2723#0 ATCTTCAAAATCCTGTACGCCCTCTTCCAGTACAACCTCCCCCTGGAACTGATCAACAGA 179 consensus_2723#1 GTAACCGGAGAGCCGCGCGTCCATGTGCG------CATCGCCTGGGAACTGATACACGTC 165 * * * * * ** ** * * * ** ** ********* ** consensus_2723#0 CAGAACCTGACAGAATGGA--TGGAGATCCTGAAGACA-GTAGTGGATAGAGACGTCCCT 236 consensus_2723#1 TGAAATCCGAAAAATCCGAGCCGCAAAAGAAGAGTTTTCGCAATGGATCCCGACGCTTTG 225 ** * ** * * ** * * * ** * * ***** **** consensus_2723#0 CCGGAAACTTCGCAA---ATAAAGGAAGATGAGCTACCAGAGCTGCCGTGGTGGAAGTGT 293 consensus_2723#1 GTCGAGGCCCTGCGGGGCACGATGGACCCCAGCCTGCGAGAG--GCCGCCGAGAGACAGC 283 ** * ** * * *** ** * **** **** * * * * consensus_2723#0 AAGAAGTGGGCTCTTCACATCTTGGCTCGCCTGTTTGAAAGGTATGGAAGCCCCGGCAAC 353 consensus_2723#1 TGAACGAGGG----TCACACCCAGGTATGCTT----------TGTGTCCACTCTG----- 324 * * *** ***** * ** ** * * ** * * * consensus_2723#0 ACAACCAAAGAGTACACAGAGTTTGCTGAACTTTTCCTGAAGGAATTTGCAGTTTCTGCT 413 consensus_2723#1 -CTGCAGATCACCATGTCTGATCAGCTGGATTTGCCTGTCAGGCAA--GCAGGTGTGATT 381 * * * * * * **** * ** * *** * **** * * consensus_2723#0 CAGCAGGTTCTGTTGAAAGTTTTGTACCAGTACAAGGAGAAGCAGTATGTGGCTCCAAGA 473 consensus_2723#1 TATCTGAAGAACATGATAACTCAGCATTGGAGCGACG-GTGATGGTTCA-GGCACAGAGA 439 * * * *** * * * * * * * * * ** *** * *** consensus_2723#0 -GTCCTCCAACAG-ACTCTGAACTATATCAATCAGGGTATCGCACATGCTCTGACATGGA 531 consensus_2723#1 CGCCCGTCAATAACATTCCTGACGAGGACCGGCAGTTCATCCGAGACAGCAT--CGTGGA 497 * ** *** * * ** ** * * *** *** * * * * **** consensus_2723#0 GAAACCTCAAACCACATATCCAGGGCATCATTCAGGATGTGGTTTTCCCCCT-CATGTGT 590 consensus_2723#1 GG--CCATCATCCAC-TCTCCCGAGCGCA--TCAGGGTACAGTTGACCACCTGCATCCAT 552 * ** * **** * *** * ** ***** * *** ** *** *** * consensus_2723#0 TACACAGACAGTGATGATAGACTGTGGCAGGAGGATCCATACGAGTACATTCGCATGAAG 650 consensus_2723#1 CACATGATCAAGCATGACT-ACCCTGGCAAGTGGACCACCAT-----CGTGGAC---AAG 603 *** ** **** ** ***** * *** * * * * * *** consensus_2723#0 TTTGATGTGTTTGAGGACTTCATTTCTCCAACAACTGCAGCGCAGACTCTCCTCTTCACC 710 consensus_2723#1 ATTGGCTTCTATCTGCAGTCCGACAACAGAGCAGG-GTGGCTCGGCATCTTG-CTTTGCC 661 *** * * * * * * * * ** * ** * * *** *** ** consensus_2723#0 TCCTGCAACAAAAGAAAAGAGGTGC-TGCAAAAGACGATGGGGTTCTGCTACCAGATTCT 769 consensus_2723#1 TTTACCAGCTCGTGAAAAACTATGAATATAAGAAACCAGAAGAACGTGC-ACC----TCT 716 * ** * ***** ** * ** * ** * * *** *** *** consensus_2723#0 CATTGATCCTGCATGTGACGCCAGGAAAAAAGATGGCGCCCTTCACATGATTGGCTCTCT 829 consensus_2723#1 GGTGGCT----------------------------------------------------- 723 * * * consensus_2723#0 GGCTGAAATCCTGCTGAAGAAAAAAATTTACAAAGACCAGATGGAATTAATGCTGCAGGC 889 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TCACGTC 896 consensus_2723#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |