These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 415 fasta sequence [TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG-CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAA--AAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG] [+] EMBL FR0057474 [TCCCCTTTGCTAGCGTACGACGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAGAGTACAACTGGGGTGACAAGGCCACGAGGACGAACACCACTGGAACTGGGCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGCAATGGTTTCCGGGAAGGTACCACCCCCATGCCCAGACGCGCTGCAGTGGACGCATCCAGCTCATCCTAACGACACATTTTTGG ] [+] EMBL CA589380 [ TAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAAT ] [+] EMBL CA330505 [ GAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAA ] [-] EMBL CA588692 [ ACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCCCTGGAACTGGCCGCGTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCC ] [+] EMBL FR0055820 [ CTCATCTTACGGTAAGCCGCCGGAACAAGACGAACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCAGCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATG ] [+] EMBL CA333517 [ TTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT ] [+] EMBL FR0058590 [ AGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAATNAAAAT AAAAAAAA ] [+] EMBL FR0055974 [ GACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAAAGAACAAAAAAAAAAAAACCCCCCGGGGGGGCCCCGGCCCCCAATTTTTG ] [+] EMBL FR0056982 [ ACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAATACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG ACAAA ANAAAAAAAAAAAAAACCCCGAGGGGGG CCCGGGAACCAAGTTTTGGG] [+] EMBL CA847133 [ CGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATA ] [+] EMBL CA845373 [ GTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCTTTTTTTGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT ] [+] EMBL FR0057394 [ GTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG AAAAAA AAAAAAAAAAAAAAAACCCCGGGGGGGGGC ] [+] EMBL CA333203 [ CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAA ] [+] EMBL CA588162 [ CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAA ] [+] EMBL CA845684 [ AATGGTTTCCGGGAAGGCACCACCCCC AACCCTTAC AGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTA ] consensusID : consensus_2747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA] [+] EMBL CA330581 [CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2747#0 TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAGCGCCGGAA 60 consensus_2747#1 ----------------------------------------------------CCNGGATT 8 * * consensus_2747#0 CAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 120 consensus_2747#1 TTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 68 ********************************************************* consensus_2747#0 CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 180 consensus_2747#1 CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 128 ************************************************************ consensus_2747#0 CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 240 consensus_2747#1 CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 188 ************************************************************ consensus_2747#0 ATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGC 300 consensus_2747#1 ATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGC 248 ******************* **** *** ******************************* consensus_2747#0 ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAA 360 consensus_2747#1 ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA------- 301 ***************************************************** consensus_2747#0 AAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG 415 consensus_2747#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |