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Takifugu rubripes
cluster # 2747 cluster # 2747       Sequences # 16       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2747#0 length = 415 sequences # 15  
consensus_2747#1 length = 301 sequences # 1  

consensusID : consensus_2747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 415
fasta sequence
                              [TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG-CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAA--AAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG]

[+] EMBL FR0057474            [TCCCCTTTGCTAGCGTACGACGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAGAGTACAACTGGGGTGACAAGGCCACGAGGACGAACACCACTGGAACTGGGCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGCAATGGTTTCCGGGAAGGTACCACCCCCATGCCCAGACGCGCTGCAGTGGACGCATCCAGCTCATCCTAACGACACATTTTTGG                                                                                       ]
[+] EMBL CA589380             [          TAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAAT                                                                             ]
[+] EMBL CA330505             [                                GAACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAA                                                                 ]
[-] EMBL CA588692             [                                  ACCTCATCTTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCCCTGGAACTGGCCGCGTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCC                                                                                                                                               ]
[+] EMBL FR0055820            [                                    CTCATCTTACGGTAAGCCGCCGGAACAAGACGAACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCAGCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATG                                                                            ]
[+] EMBL CA333517             [                                          TTTCGGTAAG CGCCGGAACAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT                                                                   ]
[+] EMBL FR0058590            [                                                               AGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAATNAAAAT  AAAAAAAA                                          ]
[+] EMBL FR0055974            [                                                                GACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAAAAAAAAGAACAAAAAAAAAAAAACCCCCCGGGGGGGCCCCGGCCCCCAATTTTTG  ]
[+] EMBL FR0056982            [                                                                       ACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAATACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG     ACAAA  ANAAAAAAAAAAAAAACCCCGAGGGGGG  CCCGGGAACCAAGTTTTGGG]
[+] EMBL CA847133             [                                                                                CGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATA                                                                  ]
[+] EMBL CA845373             [                                                                                 GTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCTTTTTTTGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTAT                                                                   ]
[+] EMBL FR0057394            [                                                                                    GTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGG    AAAAAA  AAAAAAAAAAAAAAAACCCCGGGGGGGGGC                    ]
[+] EMBL CA333203             [                                                                                                                                                                                     CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAA                                                          ]
[+] EMBL CA588162             [                                                                                                                                                                                     CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAA                                                            ]
[+] EMBL CA845684             [                                                                                                                                                                                                                                                        AATGGTTTCCGGGAAGGCACCACCCCC AACCCTTAC AGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTA                                                                    ]


>consensus_2747#0 TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAGCGCCGGAA CAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG ATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGC ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAA AAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG



consensusID : consensus_2747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence
                              [CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA]

[+] EMBL CA330581             [CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA]


>consensus_2747#1 CCNGGATTTTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAG AAATCCTCCTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGT GCCAAGGCCAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTC TACCGCAGATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCA GTGGCCGCATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2747#0      TCCCCTTTGCTAGCGTACGAAGATGACGAAGGGAACCTCATCTTTCGGTAAGCGCCGGAA 60
consensus_2747#1      ----------------------------------------------------CCNGGATT 8
                                                                          *   *   

consensus_2747#0      CAAGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 120
consensus_2747#1      TTTGACGCACACCTTGTGCCGTCGTTGCGGGGCCAAAGCTTACCATCTGCAGAAATCCTC 68
                         *********************************************************

consensus_2747#0      CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 180
consensus_2747#1      CTGTGGCAAGTGTGGCTACCCCCAGAAACGCAAGAGAAAGTACAACTGGAGTGCCAAGGC 128
                      ************************************************************

consensus_2747#0      CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 240
consensus_2747#1      CAAGAGGAGGAACACCACTGGAACTGGCCGCCTCAGACACCTGAAGGTTGTCTACCGCAG 188
                      ************************************************************

consensus_2747#0      ATTCAGGAATGGTTTCCGGGAAGGCACCACCCCCAAACCCAGACGCGCTGCAGTGGCCGC 300
consensus_2747#1      ATTCAGGAATGGTTTCCGGTAAGGTACCTCCCCCAAACCCAGACGCGCTGCAGTGGCCGC 248
                      ******************* **** *** *******************************

consensus_2747#0      ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAAGGAAAAA 360
consensus_2747#1      ATCCAGCTCATCCTAAAGACACATTTTTGGTTAAATAAATGTGATGTTATAAA------- 301
                      *****************************************************       

consensus_2747#0      AAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCCGGGAACCAAGTTTTGGG 415
consensus_2747#1      -------------------------------------------------------
                                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)