These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 756 fasta sequence [CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGTCGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCCATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTGAAGGTTCTGGGGAACGGTGGG] [+] EMBL CA588253 [CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAGGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGATCCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGTCGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCCATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTGAAGGTTCTGGGGAACGGTGGG] [+] EMBL CA589890 [ CTCTGCTCATCACTGCAGATGGCTTCTATCGAGGATATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGTCATGTTCTCCTGTCCCGATCTTCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGAACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGATTGGTGCGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCCCTGTGAAACCCAAAGGGGCTCTCCACACCATCAGCGGCTAC ] [+] EMBL FR0059460 [ tTGCAGATGGCTTCTATCGACCAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGGTGCCGGGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGCGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAG GGCTCCACTGGGAAAACCAAGGGGGTTCTCCACACCATCAGC ] consensusID : consensus_2770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 633 fasta sequence [GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC-GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG] [+] EMBL CA590202 [GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGGCCCCTTGCTAACGGAGCCACCAGTGTGCTG ] [+] EMBL CA590648 [GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAG ] [+] EMBL BU808226 [GGTTTCTCTGCTGAGTCGCTGTGTGCAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCTTTTCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCCGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC ] [+] EMBL FR0061382 [ GTCGCTGTGTGAAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCGGAGGGCTTCTATCGAGGAGATAAACTGCCCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAAGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GAGGAACCCTGAGGCGGAACCTGGCTGGCACACTtct ] [+] EMBL CA589128 [ GTGTGCAAGGATCCTGGACTCTCAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTTGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACC ] [+] EMBL FR0060592 [ CTCTGCTCATCACTGCAGATGGCTTCTATCGAGCAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGGTGAAGCACTTGTGCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGACTTCGTCAGCCAAGCGCTTCTGTCCCGATCTTCAGCAGGATAAACCGACC ] [+] EMBL FR0060869 [ TGGGGATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTACAGCCAAGCGCTCCTGTTCCGATCTTCAGCAGG ] [+] EMBL FR0062802 [ GCTCATCACTGCAGATGGGTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGGGCC GTGGAACCCTGAGGAGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGGGAGTCTGAAGACCCGCTTTTCATCCTCTACACCAGGGGCTCCACTTGGGAAACCCAGGGGG ] [+] EMBL FR0061699 [ CTCATCACTGCAGATGGCGGCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCCGGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTTCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACAC ] [+] EMBL FR0059431 [ CTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGACTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGGCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGAC ] [+] EMBL FR0059512 [ CATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAAGCGCGGTCTGTACCGCAGGT ] [+] EMBL FR0060750 [ CATCACTGCAGATGNCTTCTATCCAGNAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGGCTCCTCCAGCCAAGCGCTCCTGTTCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAG ] [+] EMBL FR0060247 [ ATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAAAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGG ] [+] EMBL FR0058968 [ AGATGGGTGCTATCGAGGAGATAAACTGATCAACCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTT CAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGTGGCC GTGGAACCCTGAGGTGGA ] [+] EMBL CA846158 [ AGGAGATAAACTGATCATCCTGAAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAGTGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCTCCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAGAGTAAAGAAAGCGCGTCCTGTACCGCAGGTGCC GTGGAACCCTGAGGTGTTTTTGTGCTGGCACACTCTGGTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTCATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGCTACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTCTACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCCCTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2770#0 CTCTCAATCGTGTTCGCAGGTTTCTCTGCTGAGTCGCTGTGCCTTAGGATCCTGGACTCT 60 consensus_2770#1 ------------------GGTTTCTCTGCTGAGTCGCTGTGTGAAAGGATCCTGGACTCT 42 *********************** *************** consensus_2770#0 CAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTG 120 consensus_2770#1 CAGTGTTCTCTGCTCATCACTGCAGATGGCTTCTATCGAGGAGATAAACTGATCAACCTG 102 ************************************************************ consensus_2770#0 AAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAG 180 consensus_2770#1 AAGGTCCTGGCTGATGACGCGCTGCAGAAGTGCAGAGACAAGGGCTTCCCGCTGCTCAAG 162 ************************************************************ consensus_2770#0 TGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCT 240 consensus_2770#1 TGTATTGTGTTGAAGCACTTGTCCAGGGAAGAGGAGGAGACTCCTCTGGGCTCCCAGTCT 222 ************************************************************ consensus_2770#0 CCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAG--------------------------- 273 consensus_2770#1 CCTCCAGCCAAGCGCTCCTGTCCCGATCTTCAGCAGGATAAACCGACCAAAGTAAAGAAA 282 ********************************* consensus_2770#0 ------------------GTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTG 315 consensus_2770#1 GCGCGTCCTGTACCGCAGGTGCCGTGGAACCCTGAGGTGGACCTGTGCTGGCACACTCTG 342 ****************************************** consensus_2770#0 GTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTC 375 consensus_2770#1 GTTCGCGGGGCCTCGGACGAGTGTGAACCGGAGTGGTGTGAGTCTGAAGACCCGCTCTTC 402 ************************************************************ consensus_2770#0 ATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGC 435 consensus_2770#1 ATCCTCTACACCAGTGGCTCCACTGGGAAACCCAAGGGGGTTCTCCACACCATCAGCGGC 462 ************************************************************ consensus_2770#0 TACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC 495 consensus_2770#1 TACATGCTCTACACCGCCACCACCTTCAAACTGGTGTTTGACCACCAGCCCCATGATGTC 522 ************************************************************ consensus_2770#0 TACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCC 555 consensus_2770#1 TACTGGTGTACGGCGGACATCGGGTGGATCACCGGACACTCGTACATCACCTACGGCCCC 582 ************************************************************ consensus_2770#0 CTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCGGACGTCAGT 615 consensus_2770#1 CTTGCTAACGGAGCCACCAGTGTGCTGTTCGAGGGCCTGCCCACATACCCG--------- 633 *************************************************** consensus_2770#0 CGCTTATGGGAGGTGGTGGACCAATATCAGGTGACCAAGTTCTACTCGGCGCCGACCGCC 675 consensus_2770#1 ------------------------------------------------------------ consensus_2770#0 ATCAGGATGCTGATGGAGTACGGCAGCGAGCCGGTGCAGAAGTCACGCCGGGAGTCTCTG 735 consensus_2770#1 ------------------------------------------------------------ consensus_2770#0 AAGGTTCTGGGGAACGGTGGG 756 consensus_2770#1 --------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |