These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [GGAATTATTAGACGGGTCTAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTGTTAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGAATCTGATCGGGTGATCGTGGCAACCGTATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGATGAACCATCTT] [+] EMBL FR0060297 [GGAATTATTAGACGGGTCTAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTGTTAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGAATCTGATCGGGTGATCGTGGCAACCGTATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGATGAACCATCTT] consensusID : consensus_364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGGTCACTGTCCCTGAGCTGCTGCTTGATTTCAGACACTAACTTGACTTCTTCTGCTTTCTTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGGGGATCGGGGCAACCGGGATTCTCAGGACGGCT] [+] EMBL FR0060514 [AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCACTAGAGGTCACTGTCCCTGAGCTGCTGCTTGATTTCAGACACTAACTTGACTTCTTCTGCTTTCTTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAATCTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGGGGATCGGGGCAACCGGGATTCTCAGGACGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_364#0 GGAATTATTAGACGGGTC-TAGTTTTGATGAGCAAACTAATGAGGTTGTTCAGTTTTCTG 59 consensus_364#1 ---AGCATGAAATAATCCCTAAACGGGACGTTTTTATTGAGCAGTT--CTTAGTTTCTTG 55 * ** * * * ** ** * * * * ** * * ***** ** consensus_364#0 T-TAAATGGGCGCTGAATAGTTTGACAGCATGAAATAATCCCTAAACGTGACGTTTTTAT 118 consensus_364#1 CATCATCACACGCTGACGGGTGTTACCG---ACGGCCACCACTAGAGGTCAC--TGTCCC 110 * * ****** ** * ** * * * *** * ** ** * * consensus_364#0 TGAGCAGTTCTTAGTTTCTTGCATCATCACACGCTGACGGGTGTTACCGACGGCCACCAC 178 consensus_364#1 TGAGCTGCTGCTTGATT---------TCAGACACTAACT--TGACTTCTTCTGC--TTTC 157 ***** * * * * ** *** ** ** ** ** * * ** * consensus_364#0 TAGAGCAGCTCCTGGGTGATGCTGGTGTGCTCCTCCAGCTTCTTGATATCATCCTGGAAT 238 consensus_364#1 TTCAGCAGCTCCTGGGGGATGCTGGGGTGCTCCTCCAGCTTCTTGATATCATCCTGGAAT 217 * ************* ******** ********************************** consensus_364#0 CTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCG-AATCTGATCGGG 297 consensus_364#1 CTGCTGACGTTGGACAGCAGATTATTGATTTCGTCAATCATTGACCGGAATCTGATCGGG 277 *********************************************** ************ consensus_364#0 TGATCGTGGCAACCGT-ATTCTTAGGACGGCTCTGGCCACTTTCTCAATGTCATCGGGAT 356 consensus_364#1 GGATCGGGGCAACCGGGATTCTCAGGACGGCT---------------------------- 309 ***** ******** ***** ********* consensus_364#0 GAACCATCTT 366 consensus_364#1 ---------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |