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Takifugu rubripes
cluster # 379 cluster # 379       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_379#0 length = 620 sequences # 1  
 consensus_379#1 length = 192 sequences # 1  
consensusID : consensus_379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence 
                              [TCAGAAGAATTTATTGTTATCATGTGACAAACTAACAACACATGACAACTAAAGCGTTTTAATGTAAATCTCCTTTTTCCTCCACGTGGTTCTTTATGAAAAACATACAAAAACATCTTACAGACGCTTAAATATCTCAATCTCGGTATTAAAACGGGCTTCCCGCACACTCTTAAGGTGTTAGTCTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACGTGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTTCCTCTCCTCAGGAATACCATTTACCTCCAGCCTCCGAAAGGTTGACGTGACATAATTATCTCCCATGCTCGGACGAAAGGTCAATGAAGCTGGCGCATGCTTCACAGGAGGGTGAGAGGAGGGTTCGTAAAGCAAACGGAGCGCCAAACGAGCACTAACCTGATGGTCGCTGCTGCGGTATCGTAATCTGGTTTTGCAGATTCGTCTGCGTCTGCATGAGCGGCATGCTGGTGGTCTCGTAGCTGTCCGGGGTGGATGGGCGGCACCACCTCGCCGCTGACCGGGTTGAAGACGGGCAACGTGGAGAGGGGCCAGAAGAT]

[+] EMBL CA331251             [TCAGAAGAATTTATTGTTATCATGTGACAAACTAACAACACATGACAACTAAAGCGTTTTAATGTAAATCTCCTTTTTCCTCCACGTGGTTCTTTATGAAAAACATACAAAAACATCTTACAGACGCTTAAATATCTCAATCTCGGTATTAAAACGGGCTTCCCGCACACTCTTAAGGTGTTAGTCTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACGTGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTTCCTCTCCTCAGGAATACCATTTACCTCCAGCCTCCGAAAGGTTGACGTGACATAATTATCTCCCATGCTCGGACGAAAGGTCAATGAAGCTGGCGCATGCTTCACAGGAGGGTGAGAGGAGGGTTCGTAAAGCAAACGGAGCGCCAAACGAGCACTAACCTGATGGTCGCTGCTGCGGTATCGTAATCTGGTTTTGCAGATTCGTCTGCGTCTGCATGAGCGGCATGCTGGTGGTCTCGTAGCTGTCCGGGGTGGATGGGCGGCACCACCTCGCCGCTGACCGGGTTGAAGACGGGCAACGTGGAGAGGGGCCAGAAGAT]




>consensus_379#0
TCAGAAGAATTTATTGTTATCATGTGACAAACTAACAACACATGACAACTAAAGCGTTTT
AATGTAAATCTCCTTTTTCCTCCACGTGGTTCTTTATGAAAAACATACAAAAACATCTTA
CAGACGCTTAAATATCTCAATCTCGGTATTAAAACGGGCTTCCCGCACACTCTTAAGGTG
TTAGTCTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACG
TGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTT
CCTCTCCTCAGGAATACCATTTACCTCCAGCCTCCGAAAGGTTGACGTGACATAATTATC
TCCCATGCTCGGACGAAAGGTCAATGAAGCTGGCGCATGCTTCACAGGAGGGTGAGAGGA
GGGTTCGTAAAGCAAACGGAGCGCCAAACGAGCACTAACCTGATGGTCGCTGCTGCGGTA
TCGTAATCTGGTTTTGCAGATTCGTCTGCGTCTGCATGAGCGGCATGCTGGTGGTCTCGT
AGCTGTCCGGGGTGGATGGGCGGCACCACCTCGCCGCTGACCGGGTTGAAGACGGGCAAC
GTGGAGAGGGGCCAGAAGAT

consensusID : consensus_379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence 
                              [CTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACGTGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTTCCTCTCCTCAGGAATACCATTTACCTAAAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGAACCAAGTTTTGGTC]

[+] EMBL FR0057598            [CTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACGTGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTTCCTCTCCTCAGGAATACCATTTACCTAAAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGAACCAAGTTTTGGTC]




>consensus_379#1
CTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACGTGAAA
CCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTTCCTCT
CCTCAGGAATACCATTTACCTAAAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCCGGAAC
CAAGTTTTGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_379#0      TCAGAAGAATTTATTGTTATCATGTGACAAACTAACAACACATGACAACTAAAGCGTTTT 60
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      AATGTAAATCTCCTTTTTCCTCCACGTGGTTCTTTATGAAAAACATACAAAAACATCTTA 120
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      CAGACGCTTAAATATCTCAATCTCGGTATTAAAACGGGCTTCCCGCACACTCTTAAGGTG 180
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      TTAGTCTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACG 240
consensus_379#1      -----CTAGATGGTAAAAGCTGTTGTGGAGCATGCATGTTGGCACAGATGGACAATAACG 55
                          *******************************************************

consensus_379#0      TGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTT 300
consensus_379#1      TGAAACCAGAAGAGCTCCGACAGCTTCCGCTGGTCACAAATTGAGAGCTTCGGCCACCTT 115
                     ************************************************************

consensus_379#0      CCTCTCCTCAGGAATACCATTTACCTCCAGCCTCCGAAAGGTTGACGTGACATAATTATC 360
consensus_379#1      CCTCTCCTCAGGAATACCATTTACCTAAAAAAAAAAAAAAAAAACCCCGAGGGGGGGCCC 175
                     **************************  *       ***      *  **         *

consensus_379#0      TC--CCATGCTCGGACGAAAGGTCAATGAAGCTGGCGCATGCTTCACAGGAGGGTGAGAG 418
consensus_379#1      GGAACCAAGTTTTGGTC------------------------------------------- 192
                         *** * *  *                                              

consensus_379#0      GAGGGTTCGTAAAGCAAACGGAGCGCCAAACGAGCACTAACCTGATGGTCGCTGCTGCGG 478
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      TATCGTAATCTGGTTTTGCAGATTCGTCTGCGTCTGCATGAGCGGCATGCTGGTGGTCTC 538
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      GTAGCTGTCCGGGGTGGATGGGCGGCACCACCTCGCCGCTGACCGGGTTGAAGACGGGCA 598
consensus_379#1      ------------------------------------------------------------
                                                                                 

consensus_379#0      ACGTGGAGAGGGGCCAGAAGAT 620
consensus_379#1      ----------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)