These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTCCGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGTTATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATATGCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACATTGTCCTTTCCTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGACTCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGTATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAAAATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCCACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTTCAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC] [+] EMBL CA589912 [AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTCCGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGTTATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATATGCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACATTGTCCTTTCCTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGACTCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGTATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAAAATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCCACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTTCAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC] consensusID : consensus_480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCCTGAGCCAATCAGGATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATATTTTCTGTGAACTATTTTTATTTATTTGGTGCTTCTCAAATATCATTATCAAAGGAAAACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTGATAAATGTTTTATTACAATACACCAATTCATATCCGGGAGAATATTTTTCTTTCAAAACATATACATATATAAAATACAGTTTAGTGGATTTCATTTAAAAAAAAAATATGTGCACAAAGTTTTTTCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCAAATGTCTACCGGCCCATTTTAA] [+] EMBL CA332221 [CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCCTGAGCCAATCAGGATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGCAGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATATTTTCTGTGAACTATTTTTATTTATTTGGTGCTTCTCAAATATCATTATCAAAGGAAAACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTGATAAATGTTTTATTACAATACACCAATTCATATCCGGGAGAATATTTTTCTTTCAAAACATATACATATATAAAATACAGTTTAGTGGATTTCATTTAAAAAAAAAATATGTGCACAAAGTTTTTTCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCAAATGTCTACCGGCCCATTTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_480#0 AAACATTGTCACTCGCGTATTTCACAGTCCCAGCTGTGCCTCTTCGTCCTGACTCCGCTC 60 consensus_480#1 ------------------------------------------------------------ consensus_480#0 CGCTGTAGCGTCTGTTTCTACTGAAGGCGCAGGAGTCTTTCTCCGAGAGAAGAACATTGT 120 consensus_480#1 ------------------------------------------------------------ consensus_480#0 TATGGGTAGTTGTTGGCGCTCTATCTTTTTCTGAGCAAGAAGATTTATATAAACGGATAT 180 consensus_480#1 --CAGTACAGCGTCAATATTTTATTTCTAGACAACAGTAAAGCCCC---TGAGCCAATCA 55 * ** * *** * * * *** * * * ** consensus_480#0 GCCACCTTCGATTATATTTGAGAACTGCAATGAACGACTCGCAAAAAAAATCCGTGAAGC 240 consensus_480#1 G--GATTCAGAGCACAATGCACTGTAAAAATATCCGCACTGTAAAAAAAATCCGTGAAGC 113 * * ** * * * * *** ** * ****************** consensus_480#0 AGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGGTGCATTTAACA 300 consensus_480#1 AGCGAAGCCGTGAAAGATGAAACGCGATATAGCGAGGGATCACTGTAGTTCACAAAAATA 173 ************************************************ * ** * consensus_480#0 TTGTCCTTTC-CTGTTTCACTTGATTGTATTGTGTCACATGTCTTCATTGTACATGTGAC 359 consensus_480#1 TTTTCTGTGAACTATTTTTATTTATT-TGGTGCTTCTCAAATAT-CATTATCAAAGGAA- 230 ** ** * ** *** ** *** * ** ** ** * * **** * * * * consensus_480#0 TCAATACAATAGCTTGACATCTTAACTGTGAGAGGAAAGGATCTTGTATAAAAATGATGT 419 consensus_480#1 --AACAGAAAACATGATGGTAAAAACTACTTTATATACAGTGCCTG---ATAAATGTTTT 285 ** * ** * * * **** * * * * ** * ***** * * consensus_480#0 ATTGTCCAGAAGGGGTAGGATGGTTCTAACTTGGAAATAACTTTTTTGTTGTTATTTGAA 479 consensus_480#1 ATTAC--------AATACACCAATTCATATCCGGGAG-AATATTTTTCTTTCAAAACATA 336 *** ** *** * ** * ** ***** ** * * consensus_480#0 AATGATATTCAAAGGGTGTTTTGCTCTGATTTTGCTTCTGCAGGTCTGTGAAACATATCC 539 consensus_480#1 TAC-ATATATAAAATACAGTTTAGTG-GATTTCATTTAAAAAAA------AAATATGTGC 388 * **** *** *** * ***** ** * *** ** * * consensus_480#0 ACGAGATCTGTATGTCCCCATCACGGCCAGTAAACCCATCATTGTGGGCAGTTCCAAGTT 599 consensus_480#1 ACAAAGTTTTT-TCTGACAAAGAATTTTTGTAAGAAATCCATACAATATGCTTTTATGCA 447 ** * * * * * * * * * **** *** ** * * consensus_480#0 CAGAAGCAAAGGGCGGTTTTCTGTACTCACATAC 633 consensus_480#1 AATGTCTACCGGCCCATTTTAA------------ 469 * * ** * **** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |