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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGGCTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCTTGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAACATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCTCAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGTGTGCTGACATGTACTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGGCTCGCAAATGGGCTTAGCAGCCATTCCAGTCTATGTACACCTGAAGACTGGTCTCTCTCTGAATGTATATGAATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCTCCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAAAAAATTTAAAGCGGGGCACAGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGCGCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG]
[+] EMBL BU807870 [ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGGCTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCTTGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAACATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCTCAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGTGTGCTGACATGTACTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGGCTCGCAAATGGGCTTAGCAGCCATTCCAGTCTATGTACACCTGAAGACTGGTCTCTCTCTGAATGTATATGAATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCTCCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAAAAAATTTAAAGCGGGGCACAGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGCGCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG]
consensusID : consensus_6#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CAGCTTAAAAGTATGTGTAATTTGTTGTATTTGTCTCACAAATGGCCTTAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTCTCTCTGAATGTATATGAATGGATCACTGACAGTATGCTGCCTCTGACACATTTTAGCTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAACAGAGCTATGACATTCATTTTTGGCCTTTATTTTGATGAAATTGTGAGCGCTTGTGTTGTCTGATTTATTTACCTCACGCAGTTCTTATTTTGCATTGTAGTCAGTTAGATTTTTTTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTCAGACAGAGCCGTGTTGGACATTGCTTGCCTCAGGCTCACCCTTTTGTTAGTGCTACACACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAGGAGGCAACAAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGCGTCTGCACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC]
[+] EMBL CA591249 [CAGCTTAAAAGTATGTGTAATTTGTTGTATTTGTCTCACAAATGGCCTTAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTCTCTCTGAATGTATATGAATGGATCACTGACAGTATGCTGCCTCTGACACATTTTAGCTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAACAGAGCTATGACATTCATTTTTGGCCTTTATTTTGATGAAATTGTGAGCGCTTGTGTTGTCTGATTTATTTACCTCACGCAGTTCTTATTTTGCATTGTAGTCAGTTAGATTTTTTTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTCAGACAGAGCCGTGTTGGACATTGCTTGCCTCAGGCTCACCCTTTTGTTAGTGCTACACACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAGGAGGCAACAAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGCGTCTGCACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6#0 ATTTAAATAAAAATAAAGAACAATAGCTTTAAAGATTAACCAGCCCTTTAGTTTCTTTGG 60
consensus_6#1 -----------------------CAGCTTAAAAGTATGTGTAA---TTTGTTGTATTTGT 34
***** **** * * *** * * ****
consensus_6#0 CTGAATAAAATTGGACTTCTGGCAGGTTTTTTAGACATTTCCCCTCTTATCCAAGAGGCT 120
consensus_6#1 CT---CACAAATGGCCT--TAGCAGCCATTCCAGTCTATGTACACCTGACGACTGGTCTC 89
** * ** *** ** * **** ** ** * * * ** * *
consensus_6#0 TGTTAGATAAGAGGAGAACGGAAGTTTACATGAATTCCAAAGATTCTCGTCTAATGAGAA 180
consensus_6#1 TCTCTGAATGTATATGAATGGA---TCACTGACAGTATGCTGCCTCTGACACATTTTAG- 145
* * ** * *** *** * ** * * * *** * *
consensus_6#0 CATTCATTAACATATATCTTTAGTTATTAATTAAATTAAATGAAATTAATTAAAAGGGCT 240
consensus_6#1 --CTCCTTGTTTTCTAACTCCAGAAGAACACTGATATTTTGGGAAGCATTTAACCCACAA 203
** ** * ** ** ** * * * * * ** * ****
consensus_6#0 CAGACTCAAGTAGACTTTGTTTCTGTCTCAGGAATTTTCATGATGT-GTGCTGACATGTA 299
consensus_6#1 CAGAGCTA--TGACATTCATTTTTGGCCTTT--ATTTTGATGAAATTGTGAGCGCTTGTG 259
**** * * ** *** ** * ***** **** * *** * ***
consensus_6#0 CTCCCAACCTTTTGCAGCTTAAAAGTATGTGTAATTTGTAATTTACACTGTTGTATTTGG 359
consensus_6#1 TTGTCTGATTTATTTACCTCACGCAGTTCT-TATTTTGCATTGTAGTCAGTTAGATTTTT 318
* * ** * * ** * * * ** **** * * ** * *** ****
consensus_6#0 CTCGCAAATGGGCTTA-GCAGC-CATTCCAGTCTATGT---ACACCTGAAGACTGGTCTC 414
consensus_6#1 TTATGACCCTAAATAATGCAACTCAGTTCAGCTTTTACCAGAAACGGGTTCAGGGGTGTC 378
* * * * *** * ** * *** * * * ** * * *** **
consensus_6#0 TCTCTGAAT-GTATATGA-ATGGATCACCGACAGTAGTGTGCCTCTGACACATTCTANCT 472
consensus_6#1 AGACAGAGCCGTGTTGGACATTGCTTGCCT-CAGGCTCACCCTTTTGTTA-GTGCTACAC 436
* ** ** * ** ** * * ** *** * * ** * * ***
consensus_6#0 CCTTGTTTGCTAAGTCCAGAAAAACACTCGAATCCCCGAA-AAAATTTAAAGCGGGGCAC 531
consensus_6#1 ACTTGTGTTTTACTGCTGTAAGTGTCTCAAAGACTGCTAACAGAATTCACCACAAGGCAG 496
***** * ** * ** * * * ** * **** * * ****
consensus_6#0 AGAGTAACGCCTGCATTCNTCNGCCGCACTCAGCAAGAAACACGGAGCAAGANAAGGGGC 591
consensus_6#1 GAGGCAAC------AAGCTGCTAGCGTATTCTTTAACAGCTTCTCCCCTGTTTTTGCTGC 550
* *** * * * ** * ** ** * * * * **
consensus_6#0 GCCCGCCAAAAAAGACAGGAGAGNCGAANNAAAAACCNACACGCAGCG 639
consensus_6#1 GTCTGC--ACAGTGGCATCGCTGCACTCGGCACGTGCGAGGGAAAGC- 595
* * ** * * * ** * * * * ***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |