These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG] [+] EMBL CA588476 [ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG] consensusID : consensus_615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA] [+] EMBL CA340952 [GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_615#0 ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCA-TATTAAATCAGCG 59 consensus_615#1 -------------------------------GTAGCCATAGCGGCAATATTAAATCAGCG 29 *************** ************* consensus_615#0 TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 119 consensus_615#1 TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 89 ************************************************************ consensus_615#0 AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGG 179 consensus_615#1 AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGG 149 ******************************************** *************** consensus_615#0 TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 239 consensus_615#1 TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 209 ************************************************************ consensus_615#0 AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 299 consensus_615#1 AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 269 ************************************************************ consensus_615#0 GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGA 359 consensus_615#1 GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGG-----------AGCTGGAGA 318 **************************************** * ** consensus_615#0 TATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTC 419 consensus_615#1 TCGTCATTGGAGATGAACACA-TCTCGTTCACAACTTCGAAAATCGGTTC--CCTCATTG 375 * ** ** * * ** * * * * * ** *** * ** * * ** ** consensus_615#0 AAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGT 479 consensus_615#1 ATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGC-AGGAT 434 * * * * * * **** * ** * ** * * * * * * * consensus_615#0 TTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAA 539 consensus_615#1 CTGAAATGTCTCGTCTTCAGTCT-CATTAGTCTGCACTTCAAGATCA--AGCCAATCTAA 491 ** ** * *** *** ***** ** * * *** ** * *** ** consensus_615#0 CAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCT 599 consensus_615#1 GGGGTCCTCTTCTCTA----CTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACA 547 * * * * * * ** * * * ** * * * * *** * * consensus_615#0 GATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG 652 consensus_615#1 TTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA------------------ 582 ** ** * ** ** * * * * ** *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |