These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGTCTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGGATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTGCAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTCGATATCATTCGGATTGTGAAAATCTACCACTGA] [+] EMBL CA588199 [GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGTCTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGGATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTGCAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTCGATATCATTCGGATTGTGAAAATCTACCACTGA] consensusID : consensus_650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGAAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACTCATCTTGATATGGACA] [+] EMBL CA590062 [AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTGAAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTCCCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGAAAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGGTTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGCTTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGCCACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCACATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGTTCTTTCAGAAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACTCATCTTGATATGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_650#0 -GTCGCTCAAGCAATTGTACTGTAATTTTTATTATCGTGGCTGTCTCTTGCATGGCTGTG 59 consensus_650#1 AGCAGCACTAGCAATTGTACTGTAATTTTTATTATCGTGGCTGT---------------G 45 * ** * *********************************** * consensus_650#0 AAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTC 119 consensus_650#1 AAGTTCTGCAAACATATGGAATGGAAGAACTCACTATTAAGGGGAATCATACTGGCCTTC 105 ************************************************************ consensus_650#0 CCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGA 179 consensus_650#1 CCATTTCAGTTCTGCGACTCCTGGTGCCACCAGTTCGTTTGGTTGCTGCAGCAATCTGGA 165 ************************************************************ consensus_650#0 AAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGG 239 consensus_650#1 AAACTATTGAGCAGAGAGTTGTGGCTCAATATGGGTTGATTGAAGAATTTATTTCTTTGG 225 ************************************************************ consensus_650#0 TTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGC 299 consensus_650#1 TTACAGACATTGTACCAGAGATTCTTACCATTGACCAGAGGGTCCAGCTTACCCTGGGGC 285 ************************************************************ consensus_650#0 TTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGC 359 consensus_650#1 TTAGAGCACGGCTAATTTTGGAGTTGTGCCAATCTACTGCAGACTTGGAGACTGTTCAGC 345 ************************************************************ consensus_650#0 CACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCAC 419 consensus_650#1 CACACCTGGACAGAATGCAACTGCTTATCAAGGTTGGTGCTACAAATATAGAAACTCCAC 405 ************************************************************ consensus_650#0 ATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGT 479 consensus_650#1 ATTTAGAGTTTGTTGAACTAGTGAAGAAGATGCTGAACAATTCTGATCACAGACAGCAGT 465 ************************************************************ consensus_650#0 TCTTTCAGGTTTCATCCATGTTTCAGGTGGCCTCAAGTGTTCTGGAGGAATGCGTACAGT 539 consensus_650#1 TCTTTCAG-----AAAGATTTCCCAGAAGACTTTGGCCCCACATATGATAAAGCTTTACT 520 ******** * ** * *** * * * * * * * * * consensus_650#0 CTCAATCACAAGAGCAGCTCAAACTCCTGCTGCATTATCAGAAAGATCACAGTCACCTGG 599 consensus_650#1 CATCTTGATATGGACA-------------------------------------------- 536 * * * * * ** consensus_650#0 ATCACAATGAGGGCTCCATGGAAGGTGCTTTTATTACTTCTGCTCTAAAACTCTGCTGTG 659 consensus_650#1 ------------------------------------------------------------ consensus_650#0 CAACAGGAGCGGTGATGGATAAAGCCCATCCTCATAGCAATATTCAGGATGTATCATGTC 719 consensus_650#1 ------------------------------------------------------------ consensus_650#0 GATATCATTCGGATTGTGAAAATCTACCACTGA 752 consensus_650#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |