These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATTACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC] [+] EMBL CA588244 [TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATTACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC] consensusID : consensus_653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACCCATGAGAGTCTGACTCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTTGACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTGTTGACGAAACAC] [+] EMBL CA588335 [CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAATGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGTTTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCTTCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCAGGACCCATGAGAGTCTGACTCAGTTGGCAGAGACATATGGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAAGTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCTCTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAGCAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTCGAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGTAAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTGGTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTTGACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTGTTGACGAAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_653#0 TCTCATGGAGGCACAAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCTTGCGTGCAGAA 60 consensus_653#1 -------CGATCAAGAAAGCGCTGCATGATTCTGACTGCTTTGAGCCCCCTCGAGCAGAA 53 ** ********************************* ** ****** consensus_653#0 TGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGT 120 consensus_653#1 TGCATTGGATATTTGATTTAATCGGATCCTTCCTTGCAGGGGATTTTAAAAGTCTGCTGT 113 ************************************************************ consensus_653#0 TTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCT 180 consensus_653#1 TTTTCTTGTTGATTTTCATCCTGACTGCAGATTACTTAAGGAACCGTAGGTCTGGCAGCT 173 ************************************************************ consensus_653#0 TCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCA 240 consensus_653#1 TCCCTCCGGGACCCACGGCGATTCCTATTATAGGCAACATGCTCTCTCTTGACCGCAGCA 233 ************************************************************ consensus_653#0 GGACTCATGAGAGTCTGACTCAGGTAGATCGAAAGCAATTCTAATGCATCTGTTCTGATT 300 consensus_653#1 GGACCCATGAGAGTCTGACTCAG------------------------------------- 256 **** ****************** consensus_653#0 ACCACTTACGTTATTGTGCTCCTCACCTGTCGCATCTGTTCCCAGTTGGCAGAGACATAT 360 consensus_653#1 ---------------------------------------------TTGGCAGAGACATAT 271 *************** consensus_653#0 GGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAA 420 consensus_653#1 GGGAACGTGTACAGCCTGCGAACGGGCCAGACATGGATGGTGGTGGTCAACAGTTTTAAA 331 ************************************************************ consensus_653#0 GTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCT 480 consensus_653#1 GTCGTGAGAGAAGCTTTGGTAACTCATGGTGAAAGTGTGTCCGACCGTCCAGACCTCCCT 391 ************************************************************ consensus_653#0 CTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAG 540 consensus_653#1 CTGCAGGATGAAATAGCGCATGGAAAGGGCGTCATTTCCAGTAATGGCCACTTGTGGAAG 451 ************************************************************ consensus_653#0 CAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTC 600 consensus_653#1 CAGCAGAGGCGTTTCGCACTTTCAACCCTCAGATTGTTCGGATTTGGCAAGAAGTCACTC 511 ************************************************************ consensus_653#0 GAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGT 660 consensus_653#1 GAACCTTTCATCACTGATGAGTTCACACACTGCGCTAACATTTTCCGTAGCTACAAAGGT 571 ************************************************************ consensus_653#0 AAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTG 720 consensus_653#1 AAACCACTCCCCCCTCACCTCATCCTCAACAACGTCGTCTCCAACATCATCTGCTCGCTG 631 ************************************************************ consensus_653#0 GTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATC--------- 771 consensus_653#1 GTTTTCGGTCATCGCTTCGAATATGGTGACAAGAACTTCAAGAATCTGATCAAGTTGTTT 691 *************************************************** consensus_653#0 ------------------------------------------------------------ consensus_653#1 GACCAGAGCCTGCAGATCGAAGCCTCTGTTTGGGCGGAGCTCTACAACTCATTTCCTCTG 751 consensus_653#0 ------------ consensus_653#1 TTGACGAAACAC 763 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |