These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [TTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTTCTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCGTCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACGTCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAGCTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTACCT] [+] EMBL CA588372 [TTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTTCTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCGTCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACGTCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAGCTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTACCT] consensusID : consensus_670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTGTAAGGTCCATCTCAGCCTGGCGGACAGTAGCCCATGTTTTCTTCCAGCTGTCTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC] [+] EMBL FR0056186 [CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATCCGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCTATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCACATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAATCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACATCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGCGCTGTAAGGTCCATCTCAGCCTGGCGGACAGTAGCCCATGTTTTCTTCCAGCTGTCTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_670#0 ----------------------------TTACATTACGCTCGTTTAAATCGAGTTGTATC 32 consensus_670#1 CTTGTGTTATTTTTCAGACTCATTCTGTTTACATTACGCTCGTTTAAATCGAGTTGTATC 60 ******************************** consensus_670#0 CGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCT 92 consensus_670#1 CGAGAGCTACTCCGAGAATGGCTTACACGACTGCGAGTGGGACCAAGAAGAAGGTCTGCT 120 ************************************************************ consensus_670#0 ATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCAC 152 consensus_670#1 ATTACTATGACGGTGACATAGGAAATTATTATTACGGACAAGGACATCCCATGAAACCAC 180 ************************************************************ consensus_670#0 ATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAA 212 consensus_670#1 ATCGCATCCGGATGACCCACAACCTGCTTCTCAACTATGGACTCTACAGGAAAATGGAAA 240 ************************************************************ consensus_670#0 TCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACA 272 consensus_670#1 TCTATAGACCACACAAAGCCACAGCAGAGGAAATGACCAAATATCACAGCGACGACTACA 300 ************************************************************ consensus_670#0 TCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGC 332 consensus_670#1 TCAAGTTCCTGCGATCCATAAGACCGGACAACATGTCTGAGTTCAGCAAGCAGATGCAGC 360 ************************************************************ consensus_670#0 GCTTCAACGTCGGAGAGGACTGTCCTGTGTTTGACGGCCTGTTTGAATTCTGCCAACTTT 392 consensus_670#1 GCTGTAAGGTC---CATCTCAGCCTGGCGGACAGTAGCCCATGT--TTTCTTCCAGCTGT 415 *** ** *** * * * * * * *** * * **** *** ** * consensus_670#0 CTGCTGGAGGATCTGCTGCTGGCTCAGTGAAGTTAAACAGACAGCAGACCGACATCGCCG 452 consensus_670#1 CTCATATTCAACATTATAAACTGTCTTTGGGTTTCTCCCTGTAATATCTTC--------- 466 ** * * * * ** ** ** * * * consensus_670#0 TCAACTGGGCTGGAGGACTTCACCATGCAAAGAAGTCGGAGGCTTCTGGCTTCTGCTACG 512 consensus_670#1 ------------------------------------------------------------ consensus_670#0 TCAACGATATTGTCCTGGCCATCTTGGAGCTGCTCAAGAGGGTGCTGGAGCTTATCCCAG 572 consensus_670#1 ------------------------------------------------------------ consensus_670#0 CTGCATGTGAGCTTGGGCCCGTGTGAGCATTTGAGGGTGCAGGACGTTGCTCAAGGGTAC 632 consensus_670#1 ------------------------------------------------------------ consensus_670#0 CT 634 consensus_670#1 -- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |