These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTTTTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTAATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGAAAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGAAAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTAAACAAACAGGTTTGGTCACTTCGCCATGGAGGGAAATGCCATTGTGAGTAGCAAATCTGAGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTGTATCAAATGCAGGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACGAG] [+] EMBL CA588426 [GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTTTTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTAATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGAAAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGAAAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTAAACAAACAGGTTTGGTCACTTCGCCATGGAGGGAAATGCCATTGTGAGTAGCAAATCTGAGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTGTATCAAATGCAGGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACGAG] consensusID : consensus_677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CTGAAAAGGATTCAAAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAGTCGCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGAGGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAATACGAAAACTACAGATTCACTCGACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGAAGGTAGAGGAGCTCATGTTGATGACATCATCCT] [+] EMBL CA589679 [CTGAAAAGGATTCAAAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAGTCGCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGAGGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAAACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCAGTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAGATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAATACGAAAACTACAGATTCACTCGACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGAAGGTAGAGGAGCTCATGTTGATGACATCATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_677#0 GTCAATGNATGAAGTGATTTTTCTTTACCCATACCTTCTCCCCTAAAAGGAACTGATTTT 60 consensus_677#1 ------------------------------------------------------------ consensus_677#0 TTAAACACAATTAAAAAGNAGAAAGGAGNAGATTATTTGTGCATGTCGTTCAACCACTTA 120 consensus_677#1 ------------------------------------------------------------ consensus_677#0 ATATAGTCTCTCAATTTACAGGTGCCGTGATGGGACAAAGTAAGTCTATTTCCAAATAGA 180 consensus_677#1 ------------------------------------------------------------ consensus_677#0 AAGCCCAAAAGAGAGAATATTAACTGGATATTGTTTGATGTTTAGCAAAACAATCACGGA 240 consensus_677#1 ------------------------------------------------------------ consensus_677#0 AAACTACACGTAAGATTTAACTCACCGACCACAAATAAAATTTTGCCTGATGTTCGTTTA 300 consensus_677#1 ----------------------------------------------CTGAAAAGGATTCA 14 **** ** * consensus_677#0 AACAAACAGGTTTGGTCACTTCGCCATGGAGGGA-AATGCCATTGTGAGTAGCAAATCTG 359 consensus_677#1 AAAGTGAAAGCAAAATTTCACCGAGTTGTACCGTTAAAATCGTTGTGTGGATCAG---TC 71 ** * * * * ** ** * * ** * ***** * * ** * consensus_677#0 AGTGTTGATGCAGTTTCACAGTTAAACTGACTGTTTTTAAGAAGCTCAAATAAAAATTTG 419 consensus_677#1 GCCCTTTACAAAGGAATAAAGGTGCCGTGATGGGACAAAGTTTGGTCACTTCGCCATGGA 131 ** * ** * ** * *** * * * *** * ** consensus_677#0 TATCAAATGCAG-GAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAA 478 consensus_677#1 GGGAAATGCCAGCGAACAACAGAGAAAATCTCAGCTTTGTCAAACATTATGAACCTAAAA 191 ** *** *********************************************** consensus_677#0 ACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCA 538 consensus_677#1 ACACTGACGTCCAACATCTCAGAGTTTTGGTGCATGGACCAGTTGGTGCTGGAAAGTCCA 251 ************************************************************ consensus_677#0 GTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACCG 598 consensus_677#1 GTTTCATCAACTCTGTTGACACTGTTTTACGACGTAAAATCACTGGCCGAGCTCTCACAG 311 ********************************************************** * consensus_677#0 ATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAAGTAAGAAGATCAAAGAATGACTACG 658 consensus_677#1 ATGGAAATCTGGTTGAAGGCAGCTTCACCAAGAAA-TACGAAAACTACAGATTCACT-CG 369 *********************************** ** *** * * *** * *** ** consensus_677#0 AG---------------------------------------------------------- 660 consensus_677#1 ACAGTCAGATCCAAACAGCCATTATTGCATCTCTATTAATGACATCGTCGGCCTTGAGGA 429 * consensus_677#0 --------------------------------- consensus_677#1 AGGTAGAGGAGCTCATGTTGATGACATCATCCT 462 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |