These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [GCCCTCATAAGACTTGAATAGAAAAGGGGCAAACTGCTTCCATCCTTCAAGGACTGATGCAGATGGATGTCGGGGAACACTGACCACTAAAAGTCACAGGTTCCTCCTCCCGACCCCCTTGCCCCTGACGCCTTCTGTCACGCTGGCAATGGCAAGAGTCCCGAGTCCCCCCCCCTCTGCGGAAATGTCCAGTGGGCCTGTGGCCGAAAGCTGGTGTTACACACAGATCAAAGTGGTGAAGTTCTCTTATATGTGGACTATCAACAACTTCAGCTTCTGTCGTGAGGAGATGGGAGAAGTAATCAAGAGCTCCACCTTCTCCTCTGGGGCCAACGACAAGCTAAAGTGGTGTTTGCGAGTGAATCCTAAAGGTCTGGATGAGGAGAGTAAAGACTACCTGTCTCTCTACCTGCTGCTGGTCAGCTGTCCAAAGGCAGAGGTGCGTGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGGAGAGGAGACCAAAGCCATGGAAAGCCAGAGAGCTTATCGTTTTGTTCAGGGAAAAGACTGGGGCTTCAAAAAGTTCATCCGGAGAGACTTCCTCCTAGAAGAGGCCAATGGCCTCCTACCTGATGATAAGCTAACGCTTTTTTGTGAGGTAAGTGTGGTGCAGGATTCTGTTAACATATCCGGACAGAACACCATGAATATGGTGAAGGTGCCCGACTGCCGGCTAACAAATGAGCTGGGAGGCCTGTGGGAGAACTCTCGCTTCACC] [+] EMBL CA588608 [GCCCTCATAAGACTTGAATAGAAAAGGGGCAAACTGCTTCCATCCTTCAAGGACTGATGCAGATGGATGTCGGGGAACACTGACCACTAAAAGTCACAGGTTCCTCCTCCCGACCCCCTTGCCCCTGACGCCTTCTGTCACGCTGGCAATGGCAAGAGTCCCGAGTCCCCCCCCCTCTGCGGAAATGTCCAGTGGGCCTGTGGCCGAAAGCTGGTGTTACACACAGATCAAAGTGGTGAAGTTCTCTTATATGTGGACTATCAACAACTTCAGCTTCTGTCGTGAGGAGATGGGAGAAGTAATCAAGAGCTCCACCTTCTCCTCTGGGGCCAACGACAAGCTAAAGTGGTGTTTGCGAGTGAATCCTAAAGGTCTGGATGAGGAGAGTAAAGACTACCTGTCTCTCTACCTGCTGCTGGTCAGCTGTCCAAAGGCAGAGGTGCGTGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGGAGAGGAGACCAAAGCCATGGAAAGCCAGAGAGCTTATCGTTTTGTTCAGGGAAAAGACTGGGGCTTCAAAAAGTTCATCCGGAGAGACTTCCTCCTAGAAGAGGCCAATGGCCTCCTACCTGATGATAAGCTAACGCTTTTTTGTGAGGTAAGTGTGGTGCAGGATTCTGTTAACATATCCGGACAGAACACCATGAATATGGTGAAGGTGCCCGACTGCCGGCTAACAAATGAGCTGGGAGGCCTGTGGGAGAACTCTCGCTTCACC] consensusID : consensus_723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [AACTATTGGGGGGCGAACTGCTTCCATTCAGCGGGGCCTGATACAGATGCATATCCCCCCACACTCACCACTAAAAGTCACAGGGTCCTCCTCCCGACCCCCTTGCCCCTGACGCCTTCTGTCACGCTGTCAATGACAATAGTTCCGACGCC] [+] EMBL FR0060589 [AACTATTGGGGGGCGAACTGCTTCCATTCAGCGGGGCCTGATACAGATGCATATCCCCCCACACTCACCACTAAAAGTCACAGGGTCCTCCTCCCGACCCCCTTGCCCCTGACGCCTTCTGTCACGCTGTCAATGACAATAGTTCCGACGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_723#0 GCCCTCATAAGACTTGAATAGAAAAGGGGCAAACTGCTTCCATCCTTCAAGGACTGATGC 60 consensus_723#1 ----------------AACTATTGGGGGGCGAACTGCTTCCATTCAGCGGGGCCTGATAC 44 ** ***** ************ * * ** ***** * consensus_723#0 AGATGGATGTCGGGGAACACTGACCACTAAAAGTCACAGGTTCCTCCTCCCGACCCCCTT 120 consensus_723#1 AGATGCATATCCCCCCACACTCACCACTAAAAGTCACAGGGTCCTCCTCCCGACCCCCTT 104 ***** ** ** ***** ****************** ******************* consensus_723#0 GCCCCTGACGCCTTCTGTCACGCTGGCAATGGCAAGAGTCCCGAGTCCCCCCCCCTCTGC 180 consensus_723#1 GCCCCTGACGCCTTCTGTCACGCTGTCAATGACAATAGTTCCGACGCC------------ 152 ************************* ***** *** *** **** ** consensus_723#0 GGAAATGTCCAGTGGGCCTGTGGCCGAAAGCTGGTGTTACACACAGATCAAAGTGGTGAA 240 consensus_723#1 ------------------------------------------------------------ consensus_723#0 GTTCTCTTATATGTGGACTATCAACAACTTCAGCTTCTGTCGTGAGGAGATGGGAGAAGT 300 consensus_723#1 ------------------------------------------------------------ consensus_723#0 AATCAAGAGCTCCACCTTCTCCTCTGGGGCCAACGACAAGCTAAAGTGGTGTTTGCGAGT 360 consensus_723#1 ------------------------------------------------------------ consensus_723#0 GAATCCTAAAGGTCTGGATGAGGAGAGTAAAGACTACCTGTCTCTCTACCTGCTGCTGGT 420 consensus_723#1 ------------------------------------------------------------ consensus_723#0 CAGCTGTCCAAAGGCAGAGGTGCGTGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGG 480 consensus_723#1 ------------------------------------------------------------ consensus_723#0 AGAGGAGACCAAAGCCATGGAAAGCCAGAGAGCTTATCGTTTTGTTCAGGGAAAAGACTG 540 consensus_723#1 ------------------------------------------------------------ consensus_723#0 GGGCTTCAAAAAGTTCATCCGGAGAGACTTCCTCCTAGAAGAGGCCAATGGCCTCCTACC 600 consensus_723#1 ------------------------------------------------------------ consensus_723#0 TGATGATAAGCTAACGCTTTTTTGTGAGGTAAGTGTGGTGCAGGATTCTGTTAACATATC 660 consensus_723#1 ------------------------------------------------------------ consensus_723#0 CGGACAGAACACCATGAATATGGTGAAGGTGCCCGACTGCCGGCTAACAAATGAGCTGGG 720 consensus_723#1 ------------------------------------------------------------ consensus_723#0 AGGCCTGTGGGAGAACTCTCGCTTCACC 748 consensus_723#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |