These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGACCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGAGCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTTCTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACACCAAAACATGCTGTTTTTGTAGTTTAGTCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACAGCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG] [+] EMBL CA590118 [AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGACCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGAGCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTTCTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACACCAAAACATGCTGTTTTTGTAGTTTAGTCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACAGCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG] consensusID : consensus_847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [TCAGCTTTCCACCGAGAGAGGTGAGGCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTGAGTATCAGAAGACGTGCACAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCACGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATTTTCACCTGAAGGTGATTCAGAATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAGGAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGGATCCCGGA] [+] EMBL FR0062983 [TCAGCTTTCCACCGAGAGAGGTGAGGCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTGAGTATCAGAAGACGTGCACAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCACGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATTTTCACCTGAAGGTGATTCAGAATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAGGAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGGATCCCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_847#0 AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGA 60 consensus_847#1 ------------------------------------TCAGCTTTCCACCGAGAGAGGTGA 24 ************** * ** consensus_847#0 CCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGA 120 consensus_847#1 GG-CAATATCACATTATAAACCGAAGG--AGTTGTAAAATGTG---TCCTGCAGGT--GA 76 * * * * ** * * * ** * *** *** * * ** ** consensus_847#0 GCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATAT 180 consensus_847#1 GTATCAGAAGACGTGCA---CAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCA---- 129 * * * ** ** * * ** * ** * ** ** * *** consensus_847#0 CACATTATAAACCGAAGGA--GTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTT 238 consensus_847#1 CGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATT-TT 188 * * * ** * * * ** * ** * * ** ** ** * * ** * ** consensus_847#0 CTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACAC---CAAA 295 consensus_847#1 CACCTGAAGGTGATTCAG---AATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAG 245 * * *** ** ** * * **** ** * * ** *** * * * * consensus_847#0 ACATGCTGTTTTTGTAGTTTAG---TCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACA 352 consensus_847#1 GAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGG 305 * * * ** * * * * *** * * * * * *** consensus_847#0 GCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG 402 consensus_847#1 ATCCCGGA------------------------------------------ 313 * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |