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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACAACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGACAGGAGGTGATGTCTAAAGGCTCCAGAGGCATGGAGGTCATACTTTCTTCACTGGAGAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAACTGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATTCCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCTCCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCTGAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACTGCTCTTGCCTTGCCTGCAGG]
[+] EMBL CA590223 [AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACAACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGACAGGAGGTGATGTCTAAAGGCTCCAGAGGCATGGAGGTCATACTTTCTTCACTGGAGAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAACTGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATTCCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCTCCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCTGAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACTGCTCTTGCCTTGCCTGCAGG]
consensusID : consensus_858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[AAACAACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAACTAGACACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGGCAGATGACGGAACAGCAACTTTCAACTGTGTTGGAACACGTGTCTCTAGAGGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGGATGGGAAACCGGAAGAGTGGCCGTTCAACACCACCAGACACATTCA]
[+] EMBL FR0060927 [AAACAACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAACTAGACACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGGCAGATGACGGAACAGCAACTTTCAACTGTGTTGGAACACGTGTCTCTAGAGGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGGATGGGAAACCGGAAGAGTGGCCGTTCAACACCACCAGACACATTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_858#0 AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACA 60
consensus_858#1 -------------------------------------------------------AAACA 5
*****
consensus_858#0 ACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGG 120
consensus_858#1 ACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGG 65
********* * * **** *********** ****** ********************
consensus_858#0 TGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAA 180
consensus_858#1 TGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAA 125
************************************************************
consensus_858#0 ATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGAC 240
consensus_858#1 ATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAA--CTAGAC 183
************************* **** **** * * * * **** * ***
consensus_858#0 AGGAGGTG-ATGTCTAAAGGCT---CCAGAGGCATGGAGGTC-ATACTTTCTTCACTGGA 295
consensus_858#1 ACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGG 243
* * *** * ** * * *** * * **** * * * * * ** ***
consensus_858#0 GAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAAC 355
consensus_858#1 CAGATGACGGAACA-----GCAACTTTCAAC----TGTGTTGGAACA-CGTGTCTCTAGA 293
* * *** * * *** * *** **** ** * ** ***
consensus_858#0 TGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATT 415
consensus_858#1 GGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGG-ATGGGAAACCGGAAGAGT--- 349
* *** * ***** * ** ** * ** * * * *** ** * * *
consensus_858#0 CCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCT 475
consensus_858#1 --GGCCGTTCAACACCACCAG-ACACATTCA----------------------------- 377
* *** *** **** * * *
consensus_858#0 CCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCT 535
consensus_858#1 ------------------------------------------------------------
consensus_858#0 GAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACT 595
consensus_858#1 ------------------------------------------------------------
consensus_858#0 GCTCTTGCCTTGCCTGCAGG 615
consensus_858#1 --------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |