These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGGTAAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTTAGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACAGGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGGTTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGTTTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTTTTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGATCTAATCTTATTC] [+] EMBL CA591132 [ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGGTAAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTTAGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACAGGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGGTTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGTTTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTTTTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGATCTAATCTTATTC] consensusID : consensus_913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGATCTGCATAAACAGTCAAGATGAATATGAAGAAGCCATCAAGAGCGCCGAGAAGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGGTCAGGCGTGCGGCGGTCCGCTGAAGACTGAGGTGAAGGAGCTGAAAGGAGACCTCCGGCCCGCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAAGGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGCAAACCCGAAGACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGACGAGGTGGTGAAAGAG] [+] EMBL CA591056 [TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGATCTGCATAAACAGTCAAGATGAATATGAAGAAGCCATCAAGAGCGCCGAGAAGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGGTCAGGCGTGCGGCGGTCCGCTGAAGACTGAGGTGAAGGAGCTGAAAGGAGACCTCCGGCCCGCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAAGGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGCAAACCCGAAGACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGACGAGGTGGTGAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_913#0 ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAA 60 consensus_913#1 -TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAA 59 *********************************************************** consensus_913#0 ATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTC 120 consensus_913#1 ATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTC 119 ************************************************************ consensus_913#0 AATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAA 180 consensus_913#1 AATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAA 179 **************************************** ******************* consensus_913#0 TCCGTGGAAGCCTGGGT--AAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTT 238 consensus_913#1 TCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAA-GTACTT 238 *************** * **** ** * * * * * * * ** consensus_913#0 AGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACA 298 consensus_913#1 TGATGAAGATAACGAAGAGATCTG-CATAAACA-GTCAAGAT--GAATATGAAGAAGCCA 294 * **** * * * *** ** * ** ** * ** * *** * * * * * ** consensus_913#0 GGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGG 358 consensus_913#1 TCAAGAGCGCCGAGA--AGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGG 352 * * * * ** ** ** * * * ** *** * * ** ** consensus_913#0 TTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGT 418 consensus_913#1 T--------CAGGCGTGCGGCGGT--------CCGCTGAAGACTGAGGTGAAGGAGCTGA 396 * * ** *** *** * ** * * * *** ** * * consensus_913#0 TTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTT 478 consensus_913#1 AAGGAGACCTCCGGCCC--GCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAA--- 451 ** ** **** * ** * * ** * * * ** *** consensus_913#0 TTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGAT 538 consensus_913#1 --GGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGC 509 * * * * * * * * * * * ****** ** * * consensus_913#0 AACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGA 598 consensus_913#1 AAACCCGAAG-ACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGA 568 ** ** * * * *** * * ** ** ***** *** ** consensus_913#0 TCTAATCTTATTC--- 611 consensus_913#1 CGAGGTGGTGAAAGAG 584 * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |