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Deal with an Organism in a Genetic Algorithm population.
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Imported modules
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from Bio.Seq import MutableSeq
import array
import random
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Functions
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function_population
random_population
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function_population
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function_population (
new_genome,
num_organisms,
fitness_calculator,
)
Generate a population given a function to create genomes
Arguments:
new_genome - A function or callable object that will return
a genome that can be used for a new organism. This new genome
should be a MutableSeq object with a specified alphabet. num_organisms - The number of individuals we want in the population. fitness_calculator -- A funtion that will calculate the fitness
of the organism when given the organisms genome.
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random_population
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random_population (
genome_alphabet,
genome_size,
num_organisms,
fitness_calculator,
)
Generate a population of individuals with randomly set genomes.
Arguments:
genome_alphabet -- An Alphabet object describing all of the
possible letters that could potentially be in the genome of an
organism. genome_size -- The size of each organisms genome. num_organism -- The number of organisms we want in the population. fitness_calculator -- A funtion that will calculate the fitness
of the organism when given the organisms genome.
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Exceptions
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ValueError( "Alphabet type is unsupported: %s" % alphabet.letters )
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Classes
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| Organism |
Represent a single individual in a population.
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