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Hold GenBank data in a straightforward format.
classes:
o Record - All of the information in a GenBank record.
o Reference - hold reference data for a record.
o Feature - Hold the information in a Feature Table.
o Qualifier - Qualifiers on a Feature.
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Imported modules
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import Bio.GenBank
import string
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Functions
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_indent_genbank
_wrapped_genbank
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_indent_genbank
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_indent_genbank ( information, indent )
Write out information with the specified indent.
Unlike _wrapped_genbank, this function makes no attempt to wrap
lines -- it assumes that the information already has newlines in the
appropriate places, and will add the specified indent to the start of
each line.
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_wrapped_genbank
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_wrapped_genbank (
information,
indent,
wrap_space=1,
split_char=" ",
)
Write a line of GenBank info that can wrap over multiple lines.
This takes a line of information which can potentially wrap over
multiple lines, and breaks it up with carriage returns and
indentation so it fits properly into a GenBank record.
Arguments:
information - The string holding the information we want
wrapped in GenBank method. indent - The indentation on the lines we are writing. wrap_space - Whether or not to wrap only on spaces in the
information. split_char - A specific character to split the lines on. By default
spaces are used.
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Classes
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| Feature |
Hold information about a Feature in the Feature Table of GenBank record.
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| Qualifier |
Hold information about a qualifier in a GenBank feature.
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| Record |
Hold GenBank information in a format similar to the original record.
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| Reference |
Hold information from a GenBank reference.
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