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Biopython API documentation: Bio.KEGG.Map  

KEGG Map package

This module provides code to import KEGG Pathway maps for use with the Biopython Pathway module.

The pathway maps are in the format:

RXXXXX:[X.X.X.X:] A + 2 B <=> C RXXXXX:[X.X.X.X:] 3C <=> 2 D + E ...

where RXXXXX is a five-digit reaction id, and X.X.X.X is the optional EC number of the enzyme that catalyze the reaction.

Classes: Iterator -- Iterates through a file of map file. Parser -- Parses KEGG map lines into Pathway.Reaction objects.

_Scanner _Consumer

Modules and Packages   

Bio/KEGG/Map/

__init__

KEGG Map package

map_format

Martel based parser to read KEGG Map files from the Ligand database.


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