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SCOP: Structural Classification of Proteins.
The SCOP database aims to provide a manually constructed classification of
all know protein structures into a hierarchy, the main levels of which
are family, superfamily and fold.
The Scop object in this module represents the entire SCOP classification. It
can be built from the three SCOP parsable files, modified is so desired, and
converted back to the same file formats. A single SCOP domain (represented
by the Domain class) can be obtained from Scop using the domain's SCOP
identifier (sid).
- nodeCodeDict
- A mapping between known 2 letter node codes and a longer
description. The known node types are
cl (class), cf
(fold), sf (superfamily), fa (family), dm (domain),
sp (species), px (domain). Additional node types may
be added in the future.
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Modules and Packages
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Bio/SCOP/
| Cla |
Handle the SCOP CLAssification file, which describes SCOP domains.
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| Des |
Handle the SCOP DEScription file.
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| Dom |
Handle the SCOP DOMain file.
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| FileIndex | |
| Hie |
Handle the SCOP HIErarchy files, which describe the SCOP hierarchy in
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| Raf |
ASTRAL RAF (Rapid Access Format) Sequence Maps.
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| Residues | |
| __init__ |
SCOP: Structural Classification of Proteins.
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| tests |
Biopython API documentation: Bio.SCOP.tests
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