Matrix Class Reference

#include <Matrix.h>

List of all members.

Public Member Functions
	Matrix ()
	Matrix Constructor.
	~Matrix (void)
	Matrix Destructor.
bool	operator== (Matrix &)
void	printTheMat (ostream &)
void	printTheMat_MaplePCAFrmt (ostream &, const string &)
void	printTheMat_MapleTransposedPCAFrmt (ostream &, const string &)
vector< int >	getConsDist (void)
	returns the result of private functions calcConsDist(is this nessicary?)
void	printConsDist (ostream &)
void	transpose (void)
int	size (void)
	returns the size of the matrix
void	printTheMat (int, ostream &)
void	printMat (vector< vector< string > >, ostream &)
bool	findCycles (int &, int &)
Matrix	getSubMat (const int &, const int &)
vector< int >	getAvgVec (void)
vector< double >	getStdVec (void)
void	printAvgVec (ostream &)
void	printStdVec (ostream &)
void	printStats (ostream &)
void	printStats_GnuPlot (ostream &)
map< string, vector< int > >	groupMat (void)
int	rowSize (void)
int	colSize (void)
void	addRow (const vector< int > &row)
void	addRow_String (const string &, char *)
vector< int >	getRow (const int &)
vector< int >	getCol (const int &)
vector< int >	getCol (const string &)
bool	isEmpty (void)
	returns true if the matrix is empty
void	clear (void)
	empties the Matrix
void	printCycles (ostream &, const int &, const int &)
void	readMat (ifstream &)
void	readMat2 (ifstream &)
void	readLabels (ifstream &)
vector< string >	getLabels (void)
	returns labels
Private Member Functions
vector< int >	calcDistVec (vector< vector< string > >, vector< vector< string > >)
vector< int >	calcConsDist (void)
vector< int >	calcAvgVec (void)
vector< double >	calcStdVec (void)
Private Attributes
vector< vector< int > >	theMatrix
vector< string >	labels

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Detailed Description

The Matrix is used by various parts of the simulation for more complex mathematical analysis

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Constructor & Destructor Documentation

Matrix::Matrix

(

)

[inline]

Matrix Constructor.

Matrix::~Matrix

(

void

)

[inline]

Matrix Destructor.

---

Member Function Documentation

void Matrix::addRow

(

const vector< int > &

row

)

adds a row to the matrix

void Matrix::addRow_String	(	const string &	row,
		char *	delim
	)

Add row as a string which is then parsed into columns

vector< int > Matrix::calcAvgVec

(

void

)

[private]

calculates the average vector

vector< int > Matrix::calcConsDist

(

void

)

[private]

Calculates the hamming distance for this matrix

vector<int> Matrix::calcDistVec	(	vector< vector< string > >	,
		vector< vector< string > >
	)			[private]

vector< double > Matrix::calcStdVec

(

void

)

[private]

Calculates the standard vector

void Matrix::clear

(

void

)

[inline]

empties the Matrix

int Matrix::colSize

(

void

)

returns the number of columns

bool Matrix::findCycles	(	int &	start,
		int &	end
	)

Comment to be written

vector< int > Matrix::getAvgVec

(

void

)

returns the result of CalcAvgVec

vector< int > Matrix::getCol

(

const string &

colName

)

retrieves a a column from teh matrix by name

vector< int > Matrix::getCol

(

const int &

colIndex

)

retrieves a column from the matrix

vector<int> Matrix::getConsDist

(

void

)

[inline]

returns the result of private functions calcConsDist(is this nessicary?)

vector<string> Matrix::getLabels

(

void

)

[inline]

returns labels

vector< int > Matrix::getRow

(

const int &

rowIndex

)

returns a row from the matrix

vector< double > Matrix::getStdVec

(

void

)

returns the result of calcStdVec

Matrix Matrix::getSubMat	(	const int &	startRow,
		const int &	endRow
	)

returns the submatrix of M[startRow, endRow]

map< string, vector< int > > Matrix::groupMat

(

void

)

Comment to be written

bool Matrix::isEmpty

(

void

)

[inline]

returns true if the matrix is empty

bool Matrix::operator==

(

Matrix &

right

)

Matrix assignment operator

void Matrix::printAvgVec

(

ostream &

out

)

Prints the results of calcAvgVec to ostream out

void Matrix::printConsDist

(

ostream &

out

)

prints the calcConsDist to ostream out

void Matrix::printCycles	(	ostream &	out,
		const int &	cycleStart,
		const int &	cycleEnd
	)

prints the cycles to ostream out

void Matrix::printMat	(	vector< vector< string > >	v,
		ostream &	out
	)

prints vector v formated as a matrix

void Matrix::printStats

(

ostream &

out

)

Prints the average and std for each col to ostream out

void Matrix::printStats_GnuPlot

(

ostream &

out

)

Comment to be written

void Matrix::printStdVec

(

ostream &

out

)

Prints the results of calcStdVec to ostream out

void Matrix::printTheMat	(	int	row,
		ostream &	out
	)

prints a single row of the matrix

void Matrix::printTheMat

(

ostream &

out

)

prints the matrix to ostream out

void Matrix::printTheMat_MaplePCAFrmt	(	ostream &	out,
		const string &	runName
	)

prints the matrix in a format readable by maple

void Matrix::printTheMat_MapleTransposedPCAFrmt	(	ostream &	out,
		const string &	runName
	)

prints the transposed matrix in a format readable by maple

void Matrix::readLabels

(

ifstream &

in

)

Reads column labels from a text file the labels are assumed to be one per line

void Matrix::readMat

(

ifstream &

in

)

reads a matrix in from a filestream

void Matrix::readMat2

(

ifstream &

in

)

a different way of reading a matrix in from a file

int Matrix::rowSize

(

void

)

returns the number of rows

int Matrix::size

(

void

)

[inline]

returns the size of the matrix

void Matrix::transpose

(

void

)

transposes the matrix

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Member Data Documentation

vector< string > Matrix::labels [private]

vector< vector<int> > Matrix::theMatrix [private]

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The documentation for this class was generated from the following files:

• lib/Matrix.h
• lib/Matrix.cpp