GPBlast Home | Algorithm | Help | Publications   A) Parameters (BLAST):   Type Blastp (Protein)     Blastn (Nucleotide)   Choose filter Low complexity     Mask for lookup table only    Expect    Word size  1 2 3   Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45    Gap Costs  Existence: 9 Exension: 2 Existence: 8 Exension: 2 Existence: 7 Exension: 2 Existence: 12 Exension: 1 Existence: 11 Exension: 1 Existence: 10 Exension: 1   B) Parameters (GPBlast):   Positivity    Percentage of similar residues in the alignment.   Identity    Percentage of identical residues in the alignment.   Coverage    Percentage of alignment length to query length.   C) Upload genome:   Format GenBank     Fasta    Number of genomes to compare               Contact Asheesh Shanker OR Sachin Pundhir for Bugs/Comments. For best view 1024 x 768 resolution & IE 6.0 or above recommended.