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A) Parameters (BLAST):
  Type Blastp (Protein)     Blastn (Nucleotide)
  Choose filter Low complexity     Mask for lookup table only 
  Expect    Word size 
  Matrix    Gap Costs 
B) Parameters (GPBlast):
  Positivity    Percentage of similar residues in the alignment.
  Identity    Percentage of identical residues in the alignment.
  Coverage    Percentage of alignment length to query length.
C) Upload genome:
  Format GenBank     Fasta 
  Number of genomes to compare     
Contact Asheesh Shanker OR Sachin Pundhir for Bugs/Comments.
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