[BiO BB] help regarding MEME program
Iddo Friedberg
idoerg at burnham.org
Fri Dec 5 12:27:38 EST 2003
Hi,
Biopython provids a pretty generic way of generating log odd matrices.
You'll need to download & install it from:
http://biopython.org
Take a look first at the documentation, see if that is what you are
looking for:
http://biopython.org/docs/tutorial/Tutorial005.html#toc25
Cheers,
./I
Radhika Tallamraju wrote:
> Can anyone suggest me how to construct log odds matrix for a given
> consensus sequence. I need this to run MAST program.
>
> Regards,
> Radhika.
>
>
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--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171
http://ffas.ljcrf.edu/~iddo
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