[BiO BB] i am a graduate student requesting help for my project work on protein sequence analysis

[prathibha bharathi]

hai all....................
               and my sincere wishes to seniors and experts in this very much interesting field........
 
              i am a graduate student doing my final year b.tech at sree vidyaniketan engg college in computer science.
 
for my project work(in final semester)....i have chosen this field and selected "protein sequence analysis" as the title for my project.
 
in this-- i planning to build a simple database of protein sequences(a simple prototype database) and i am writing my own tool for the sequence analysis
( a simple but useful one)
 
and in this tool.......
       i am planning to use dynamic programming method for finding the related proteins and then i am also plotting the dot matrix showing the similarity along with the info regarding the proteins for seqs having more than 20% seq similarity(ie.above twilight zone) .
and after that i am also planning to perform phylogenetic analysis on the result dataset of my own tool(for this i have downloaded PHYLIP).
 
and after that i am also planning to do protein structure prediction and for this i am planning to use RASMOL.
 
for converting one database format to another i am going to useREADSEQ.
 
so................i am requesting you all to please help me in this project work and send me your valuable suggestions and opinions about my project.......i will be eagerly waiting for your reply........................................and also i hope i can get response to my msg as soon as possible.
 
and also for all these i have chosen java for implementing my ideas and also suggest me which database model (relational or object oriented data model) i have to use for building simple database of mine or can i do all these things simply by using files.............................
 
i am praying the god ,sincerely,to help me...........and to be with me throughout this project work and forever........................                                   
                               thank you one and all
                                           from 
                                      prathibha
                                       

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