[BiO BB] display DNA multiple alignements with gray levels
mgollery at unr.edu
Wed Apr 28 13:02:35 EDT 2004
Jalview has many color choices, but I have not seen the particular one
that you are asking for. Still, you might take a look to see if it meets
your needs at http://www.ebi.ac.uk/~michele/jalview/
c.plessy at mangoosta.net wrote:
> I am looking for a free program that would process DNA
> multiple alignments, so that that conserved nucleotides would be on a
> black background, moderately conserved on a grey background according
> to the frequency of the most frequent nucleotide, and non conserved
> nucleotides on a white background.
> Boxshade does that kind of thing, but uses gray for
> similarity, which is not useful for DNA multiple alignments.
> Ideally, the output would be in eps, or something else
> importable in Illustrator.
> I would be mega happy If somebody knew such a tool.
> Have a nice day,
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
'Don't worry that the world will end today- it's already tomorrow in
Australia...' -Charles Schulz
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