[BiO BB] display DNA multiple alignements with gray levels

Marcos de Carvalho operon at www.ufsm.br
Wed Apr 28 12:05:30 EDT 2004

Try GeneDoc:


It can export the alignment to bitmap, metafile and RTF.


On Wed, 28 Apr 2004 17:49:30 +0200, <c.plessy at mangoosta.net> wrote:

> Hello,
> 	I am looking for a free program that would process DNA
> multiple alignments, so that that conserved nucleotides would be on a
> black background, moderately conserved on a grey background according
> to the frequency of the most frequent nucleotide, and non conserved
> nucleotides on a white background.
> 	Boxshade does that kind of thing, but uses gray for
> similarity, which is not useful for DNA multiple alignments.
> (<http://www.ch.embnet.org/software/BOX_form.html>)
> 	Ideally, the output would be in eps, or something else
> importable in Illustrator.
> I would be mega happy If somebody knew such a tool.
> Have a nice day,
> Charles

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