[BiO BB] alignment problem

Dan Bolser dmb at mrc-dunn.cam.ac.uk
Fri Jan 23 05:58:23 EST 2004

> Since the number of sequences is not so big, I would use Smith-Waterman  algorithm
> to obtain optimal local alignment between any two sequences.

Is making a multiple alignment as simple as compiling all pairwise alignments to a
reference sequence?

How do you evaluate the performance of this to a 'true' multiple alignment?

More information about the BBB mailing list