[BiO BB] parsing repeatmasker .tbl files
dmnunif at charter.net
Sun Jun 27 11:54:42 EDT 2004
Sorry, we are not able to help you..
----- Original Message -----
From: "Matt McCormick" <mjmccorm at mtu.edu>
To: <bio_bulletin_board at bioinformatics.org>
Sent: Thursday, June 24, 2004 8:39 PM
Subject: [BiO BB] parsing repeatmasker .tbl files
> I've generated thousands of repeatmasker .tbl files. I want to be able to
> extract certain table information(ie filename, total_length, number of
> retroelements, and length occupied). Is there any bioperl documentation
> on doing this? I've looked at the bioperl api for
> Bio::Tools::RepeatMasker but it wasn't much help to me. Any suggestions?
> Thank you.
> -Matt McCormick
> Undergraduate in Bioinformatics
> Michigan Technological University
> BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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