[BiO BB] protein database

Thomas Schlitt schlitt at ebi.ac.uk
Thu Mar 11 12:57:15 EST 2004

Hi Lily
from where do you want to download the data?
srs lets you do something like this (I think) for the databases at EBI
try www.ebi.ac.uk/srs
select a protein Database (uniprot?)
go to query and click on field to choose Sequence length
you might want to define a "view" which contains the data fields you want
... dont know if this helps...


On Thu, 11 Mar 2004, l x yi wrote:

> Hi, 
> for my research, I need to download about 800 protein sequences each with length more than 1000 amino acids, could anyone tell me what is the best way to do this? I've looked at some batch retrieval options on the internet, but they only allow text searching using ids instead of specifying length.. 
> Thanks very much for your help. 
> Lily
> ---------------------------------
> Do you Yahoo!?
> Yahoo! Search - Find what you’re looking for faster.

     Thomas Schlitt - Bioinformatics Research Fellow 
EMBL-EBI, Hinxton             British Antarctic Survey 
Wellcome Trust Genome Campus  High Cross, Madingley Road                        
Cambridge CB10 1SD, UK        Cambridge CB3 0ET, UK 
Tel. ++44-1223-494651         Tel. ++44-1223-221656
eMail schlitt at ebi.ac.uk       tsc at bas.ac.uk  

More information about the BBB mailing list