[BiO BB] DNA Strider

[Gary Van Domselaar]

Hi Yannick,

The guy who made sms2 also makes a map viewer called CGView.  It has been 
implemented in the web server 'PlasMapper':
http://wishart.biology.ualberta.ca/PlasMapper/index.html

You can contact him to see about the availability of CGView itself:
stothard at ualberta.ca

Regards,

g.

On Tue, 30 Mar 2004, Yannick Wurm wrote:

> Hi,
> Thanks for all the feedback!
> I have checked out both sms2 and emboss, and both seem very powerfull. 
>  From what I gather though, both only seem to output text!
> For restriction enzyme cleavage sites, getting an overview with a 
> schema such as this one can be a great help though: 
> http://bcr.musc.edu/images/dnastrider.gif
> 
> I know I won't be able to replace DNA Strider before I find something 
> that makes nice visual maps as well...
> 
> Did I miss something?
> 
> yannick.
> 
> On 30-Mar-04, at 7:14 PM, Gary Van Domselaar wrote:
> > Hey Gang,
> >
> > For platform-independant sequence _manipulation_ there is the sequence
> > manipulation suite:
> >
> > http://bioinformatics.org/sms2
> >
> > SMS2 and EMBOSS together cover most of what you can expect to get out 
> > of
> > an old sequence analysis package like DNA strider.
> >
> > Decidedly,
> >
> > g.
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