[BiO BB] characterization of an incomplete genome

Ryan Golhar ryangolhar at hotmail.com
Fri May 14 20:30:29 EDT 2004

First thing I would do is obtain the genome of another organism related
to Yesinia pestis that is annotated and compare the two genomes as a
starting point.

Ryan Golhar
Computational Biologist
The Informatics Institute at
The University of Medicine & Dentistry of NJ

Phone: 973-972-5034
Fax: 973-972-7412
Email: golharam at umdnj.edu 

-----Original Message-----
From: bio_bulletin_board-admin at bioinformatics.org
[mailto:bio_bulletin_board-admin at bioinformatics.org] On Behalf Of
Jicheng Hao
Sent: Friday, May 14, 2004 4:45 PM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] characterization of an incomplete genome

Hi there,

    We have assembled a Yesinia pestis genome. However, the genome is
only 95% complete.  We would like to to characterize rearrangements,
large, medium size indels,  repeat differences, gene differences by
comparing it with a known complete genome.

    I would appreciate if anybody could give me any advice or comments.

Jicheng Hao, Ph.D.
Staff Scientist, Bioinformatics
Comparative Genomics Unit

Pathogen Genomics Division 
Translational Genomics Research Institute (TGen) 
602 343 8705 (phone)
480 570 5969 (mobile)
602 343 8740 (fax)
jhao at tgen.org

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